Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   A6L86_RS04970 Genome accession   NZ_CP016678
Coordinates   934635..935573 (+) Length   312 a.a.
NCBI ID   WP_042744699.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M25419     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 929635..940573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L86_RS04945 (A6L86_04945) - 929786..930295 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A6L86_RS04950 (A6L86_04950) - 930867..931454 (-) 588 WP_002248497.1 superoxide dismutase -
  A6L86_RS04955 (A6L86_04955) dnaB 931617..933023 (+) 1407 WP_002248498.1 replicative DNA helicase -
  A6L86_RS04960 (A6L86_04960) pilH 933332..934000 (+) 669 WP_065826233.1 GspH/FimT family pseudopilin Machinery gene
  A6L86_RS04965 (A6L86_04965) pilV 934024..934638 (+) 615 WP_065826234.1 type IV pilus modification protein PilV Machinery gene
  A6L86_RS04970 (A6L86_04970) pilJ 934635..935573 (+) 939 WP_042744699.1 PilW family protein Machinery gene
  A6L86_RS04975 (A6L86_04975) pilK 935552..936151 (+) 600 WP_002248501.1 pilus assembly PilX family protein Machinery gene
  A6L86_RS04980 (A6L86_04980) pilX 936156..936629 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6L86_RS04985 (A6L86_04985) - 938736..939164 (-) 429 Protein_939 AzlC family ABC transporter permease -
  A6L86_RS04990 (A6L86_04990) dut 939307..939759 (+) 453 WP_002220679.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34204.91 Da        Isoelectric Point: 9.6625

>NTDB_id=191530 A6L86_RS04970 WP_042744699.1 934635..935573(+) (pilJ) [Neisseria meningitidis strain M25419]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLSAQQDLRNAATLIVRDARMAGGFG
CFNMSEHPATDVVSDVAQKNRSFSLKRNGIDKLIPIAESSNIGYPGFTQRLNALIFQYGIDDVNASADTTVVSSCSKIAK
LGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLDDKGKWGNPQLLAKKVRRMDVRYIYVS
GCPEDDDAGKEETFKYTDKFDKSKNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=191530 A6L86_RS04970 WP_042744699.1 934635..935573(+) (pilJ) [Neisseria meningitidis strain M25419]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTTACATCTCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTTCCGCACAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCAGGGGGCTTCGGT
TGTTTCAATATGTCCGAGCATCCTGCAACTGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTTCTTTTTCCTTAAAAAG
GAACGGTATAGATAAACTTATTCCCATAGCGGAATCTTCAAATATCGGATATCCGGGTTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTTCCAAAATAGCAAAA
CTGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGG
ATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTTAGACGTATGGATGTGCGGTATATCTATGTTTCC
GGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAAATATACGGATAAATTCGACAAATCCAAAAATGCTGT
TACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATG
CTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

80.38

100

0.814

Multiple sequence alignment