Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6L42_RS14410 Genome accession   NZ_CP016671
Coordinates   1955192..1955656 (+) Length   154 a.a.
NCBI ID   WP_164967097.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22783     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1950192..1960656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L42_RS14410 comE 1955192..1955656 (+) 465 WP_164967097.1 helix-hairpin-helix domain-containing protein Machinery gene
  A6L42_RS10270 (A6L42_10270) comP 1955744..1956193 (+) 450 WP_002214937.1 type IV pilin protein Machinery gene
  A6L42_RS14885 (A6L42_10275) - 1956283..1956623 (-) 341 Protein_1898 5'-nucleotidase -
  A6L42_RS10280 (A6L42_10280) - 1956735..1956947 (-) 213 WP_002224145.1 SWIM zinc finger family protein -
  A6L42_RS10285 (A6L42_10285) - 1957179..1957652 (+) 474 Protein_1900 transposase -
  A6L42_RS10305 (A6L42_10305) - 1958854..1960311 (-) 1458 WP_002258745.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16442.72 Da        Isoelectric Point: 10.7894

>NTDB_id=191224 A6L42_RS14410 WP_164967097.1 1955192..1955656(+) (comE) [Neisseria meningitidis strain M22783]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPAIPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=191224 A6L42_RS14410 WP_164967097.1 1955192..1955656(+) (comE) [Neisseria meningitidis strain M22783]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCGGCTATACCGGCCGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727

Multiple sequence alignment