Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CA593_RS09490 Genome accession   NZ_CP021175
Coordinates   1875687..1876319 (-) Length   210 a.a.
NCBI ID   WP_086353574.1    Uniprot ID   -
Organism   Escherichia coli strain 5CRE51     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1870687..1881319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA593_RS09465 (CA593_09415) yhfG 1870819..1870986 (+) 168 WP_000736862.1 YhfG family protein -
  CA593_RS09470 (CA593_09420) fic 1870976..1871578 (+) 603 WP_001280641.1 putative adenosine monophosphate-protein transferase Fic -
  CA593_RS09475 (CA593_09425) pabA 1871610..1872173 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  CA593_RS09480 (CA593_09430) argD 1872259..1873479 (+) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  CA593_RS09485 (CA593_09435) yhfK 1873546..1875636 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  CA593_RS09490 (CA593_09440) crp 1875687..1876319 (-) 633 WP_086353574.1 cAMP-activated global transcriptional regulator CRP Regulator
  CA593_RS09500 (CA593_09450) yhfA 1876621..1877025 (+) 405 WP_001148908.1 OsmC family protein -
  CA593_RS09505 (CA593_09455) prkB 1877080..1877949 (-) 870 WP_001274680.1 phosphoribulokinase -
  CA593_RS09510 (CA593_09460) yheU 1878003..1878221 (-) 219 WP_000907085.1 YheU family protein -
  CA593_RS09515 (CA593_09465) yheT 1878215..1879237 (-) 1023 WP_000057356.1 hydrolase -
  CA593_RS09520 (CA593_09470) yheS 1879237..1881150 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23621.38 Da        Isoelectric Point: 8.2641

>NTDB_id=190978 CA593_RS09490 WP_086353574.1 1875687..1876319(-) (crp) [Escherichia coli strain 5CRE51]
MVLGKTQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTN
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=190978 CA593_RS09490 WP_086353574.1 1875687..1876319(-) (crp) [Escherichia coli strain 5CRE51]
ATGGTGCTTGGCAAAACGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTAAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

94.762

100

0.948
  crp Haemophilus influenzae Rd KW20

77.561

97.619

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment