NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	B9N48_RS13685	Genome accession	NZ_CP021169
Coordinates	2603168..2603773 (-)	Length	201 a.a.
NCBI ID	WP_003229717.1	Uniprot ID	O05392
Organism	Bacillus subtilis strain TLO3
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2598168..2608773

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B9N48_RS13655	-	2598980..2599351 (+)	372	Protein_2650	TIGR04086 family membrane protein	-
B9N48_RS13660	yajC	2599426..2599692 (-)	267	WP_004398708.1	preprotein translocase subunit YajC	-
B9N48_RS13665	tgt	2599730..2600875 (-)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
B9N48_RS13670	queA	2600902..2601930 (-)	1029	WP_003229723.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
B9N48_RS13675	yrzS	2601960..2602160 (-)	201	WP_003222669.1	DUF2905 domain-containing protein	-
B9N48_RS13680	ruvB	2602153..2603157 (-)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
B9N48_RS13685	ruvA	2603168..2603773 (-)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
B9N48_RS13690	bofC	2603912..2604424 (-)	513	WP_003229715.1	sporulation cell-cell signaling protein BofC	-
B9N48_RS13695	csbX	2604472..2605779 (-)	1308	WP_086344147.1	MFS transporter	-
B9N48_RS13700	iolG	2605850..2606875 (-)	1026	WP_086344148.1	inositol 2-dehydrogenase	-
B9N48_RS13705	yrzF	2607113..2607760 (+)	648	WP_038429400.1	phosphotransferase	-
B9N48_RS20670	-	2607806..2607928 (-)	123	WP_124058787.1	hypothetical protein	-
B9N48_RS20675	yrzH	2608013..2608304 (+)	292	Protein_2662	DUF5412 family protein	-
B9N48_RS13715	-	2608311..2608451 (+)	141	WP_029727127.1	hypothetical protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22584.08 Da Isoelectric Point: 5.4072

                                >NTDB_id=190809 B9N48_RS13685 WP_003229717.1 2603168..2603773(-) (ruvA) [Bacillus subtilis strain TLO3]

MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP

KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL

EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=190809 B9N48_RS13685 WP_003229717.1 2603168..2603773(-) (ruvA) [Bacillus subtilis strain TLO3]

GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA

GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAAGAAACGATTTTTACATACCATCATATCAGAGAGGATG

CTTTTTCGCTTTACGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG

AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAGGATGAAGCTTTTTT

GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC

CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT

GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC

AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	O05392

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408

Detailed information NTG0190809