Detailed information    

insolico Bioinformatically predicted

Overview


Name   recG   Type   Machinery gene
Locus tag   B9N48_RS08320 Genome accession   NZ_CP021169
Coordinates   1578200..1580248 (+) Length   682 a.a.
NCBI ID   WP_064671372.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1573200..1585248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS08290 spoVM 1573836..1573916 (+) 81 WP_003221545.1 stage V sporulation protein SpoVM -
  B9N48_RS08295 rpmB 1573989..1574177 (-) 189 WP_003221548.1 50S ribosomal protein L28 -
  B9N48_RS08300 yloU 1574454..1574816 (+) 363 WP_003232054.1 Asp23/Gls24 family envelope stress response protein -
  B9N48_RS08305 fakA 1574832..1576493 (+) 1662 WP_086343831.1 DAK2 domain-containing protein -
  B9N48_RS08310 sdaAB 1576632..1577294 (+) 663 WP_072175954.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  B9N48_RS08315 sdaAA 1577320..1578222 (+) 903 WP_032725684.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  B9N48_RS08320 recG 1578200..1580248 (+) 2049 WP_064671372.1 ATP-dependent DNA helicase RecG Machinery gene
  B9N48_RS08325 fapR 1580357..1580923 (+) 567 WP_003232044.1 transcription factor FapR -
  B9N48_RS08330 plsX 1580937..1581938 (+) 1002 WP_003232041.1 phosphate acyltransferase PlsX -
  B9N48_RS08335 fabD 1581957..1582910 (+) 954 WP_064671373.1 ACP S-malonyltransferase -
  B9N48_RS08340 fabG 1582903..1583643 (+) 741 WP_042975760.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  B9N48_RS08345 acpP 1583727..1583960 (+) 234 WP_003154310.1 acyl carrier protein -
  B9N48_RS08350 rncS 1584100..1584849 (+) 750 WP_003232030.1 ribonuclease III -

Sequence


Protein


Download         Length: 682 a.a.        Molecular weight: 78139.74 Da        Isoelectric Point: 7.2507

>NTDB_id=190768 B9N48_RS08320 WP_064671372.1 1578200..1580248(+) (recG) [Bacillus subtilis strain TLO3]
MIQHQQTSIANIKGIGPETEKTLNELGIYDISDLLNYFPYRYDDYELRDLEEVKHDERVTVEGKVHSEPSLTYYGKKRNR
LTFRLLVGHYLITAVCFNRPYLKKQLSLGSVVTVSGKWDKHRQTISVQELKNGPHQEDKSIEPVYSVKENVTVKMMRRFI
QQALTQYADSLPDPLPEKLRKSYKLPDYYQALKAMHQPETREALKLARRRFVYEEFLLFQLKMQAFRKAEREQTQGIRQR
FSNEELMRFIKSLPFPLTNAQSRVLREITADMSSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ
HADSLVSLFEKWDVSVALLTSSVKGKRRKELLERLAAGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLRN
KGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLDRILAFVEKELKQGRQAYIICPLIEESD
KLDVQNAIDVYNMLSDIFRGKWKVGLMHGKLHSDEKDQVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLS
QLHQLRGRVGRGEHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARQDAANLVASDAFWKEPEYAVLRDELLKSGVMDGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=190768 B9N48_RS08320 WP_064671372.1 1578200..1580248(+) (recG) [Bacillus subtilis strain TLO3]
GTGATACAACATCAGCAAACTAGTATAGCTAACATTAAGGGTATTGGGCCGGAAACAGAAAAAACATTGAATGAACTCGG
TATTTATGACATTTCTGATCTTCTGAATTATTTCCCTTATCGCTATGATGACTACGAGCTGAGGGATTTAGAAGAAGTAA
AGCATGATGAAAGAGTCACAGTCGAAGGGAAGGTTCATTCAGAGCCTTCTCTTACCTATTACGGAAAAAAACGAAACAGG
CTGACATTCAGGCTTCTGGTCGGCCACTATTTAATTACAGCCGTATGTTTTAACCGGCCTTATTTGAAGAAGCAGCTTTC
GCTCGGCTCTGTGGTGACGGTTTCAGGTAAATGGGACAAGCACCGCCAAACCATCTCTGTTCAGGAGTTGAAAAACGGGC
CGCATCAAGAAGACAAAAGCATTGAACCAGTGTATTCTGTGAAAGAAAATGTTACCGTCAAAATGATGAGGCGCTTTATT
CAGCAGGCGCTGACCCAATATGCAGACTCACTTCCTGATCCTCTTCCGGAAAAGCTAAGAAAAAGCTATAAACTGCCTGA
CTATTATCAAGCGTTAAAAGCAATGCACCAGCCTGAAACAAGGGAAGCATTAAAGCTTGCCAGACGGCGGTTTGTTTATG
AAGAATTTTTGTTGTTTCAGTTGAAAATGCAGGCGTTCCGAAAGGCGGAAAGAGAGCAGACACAAGGGATACGGCAGCGT
TTTTCAAACGAAGAACTCATGAGATTTATCAAAAGCCTCCCGTTTCCCCTCACAAACGCCCAGTCACGCGTTCTTCGCGA
AATAACAGCAGACATGTCTTCTCCATACAGAATGAACCGTCTTCTTCAAGGGGACGTTGGATCAGGAAAAACAGCAGTCG
CCGCCATTGCACTGTATGCCGCGATCCTATCCGGATACCAAGGAGCGCTCATGGTGCCGACAGAAATTCTGGCCGAGCAG
CATGCTGATTCGCTCGTTTCGCTATTTGAAAAATGGGACGTCAGCGTTGCTCTTTTGACAAGCTCTGTTAAAGGAAAGCG
GCGAAAAGAACTGCTTGAGCGTCTTGCGGCGGGTGAGATTGATATTCTTGTAGGAACCCACGCTTTAATCCAAGACGAGG
TGGAGTTTAAGGCGCTGAGTCTCGTTATTACAGATGAACAGCACAGATTTGGAGTTGAGCAGCGCAAAAAGCTTCGGAAC
AAAGGGCAGGATCCCGATGTTCTCTTTATGACAGCCACTCCAATCCCAAGAACATTAGCGATCACAGTGTTCGGTGAAAT
GGATGTATCTGTCATTGATGAGATGCCGGCTGGACGAAAGCGAATCGAAACCTATTGGGTAAAACATGACATGCTGGATC
GTATTTTGGCATTTGTCGAAAAAGAATTAAAGCAAGGCAGGCAGGCTTATATCATCTGTCCGCTGATTGAAGAATCAGAC
AAGCTTGATGTGCAAAACGCCATTGACGTGTACAATATGCTTTCTGATATTTTTCGGGGAAAATGGAAGGTCGGCCTTAT
GCATGGGAAGCTGCATTCCGATGAAAAAGACCAGGTCATGAGAGAATTCAGCGCAAATCACTGTCAAATTCTCGTATCAA
CCACTGTTGTGGAGGTTGGCGTGAATGTTCCGAATGCAACGATTATGGTGATTTATGACGCCGACCGTTTCGGACTATCA
CAGCTTCACCAGCTGCGCGGCCGTGTTGGACGGGGTGAGCATCAATCTTTCTGTATTCTGATGGCTGATCCAAAATCAGA
AACAGGGAAAGAACGGATGAGGATCATGTCGGAGACCAATGACGGTTTCGAGCTGTCTGAAAAGGATCTGGAACTGAGAG
GTCCCGGTGATTTCTTCGGAAAAAAACAAAGCGGAATGCCGGAATTTAAAGTGGCGGACATGGTTCATGATTACAGAGCG
CTTGAAACGGCAAGGCAGGATGCTGCGAATCTTGTGGCTTCTGACGCGTTCTGGAAGGAGCCGGAATACGCTGTGTTAAG
AGATGAATTGCTGAAGAGCGGAGTAATGGACGGGGAAAAATTAAGCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

99.56

100

0.996

  recG/mmsA Streptococcus pneumoniae R6

49.175

97.801

0.481

  recG/mmsA Streptococcus pneumoniae R36A

49.175

97.801

0.481

  recG Neisseria meningitidis strain C311

39.542

96.041

0.38


Multiple sequence alignment