Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A6L52_RS00135 Genome accession   NZ_CP016662
Coordinates   17641..18234 (-) Length   197 a.a.
NCBI ID   WP_002248275.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M23413     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 12641..23234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L52_RS14640 - 12760..12885 (-) 126 Protein_18 IS5/IS1182 family transposase -
  A6L52_RS00115 (A6L52_00115) dapC 12973..14160 (-) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  A6L52_RS00120 (A6L52_00120) dut 14236..14688 (-) 453 WP_002220679.1 dUTP diphosphatase -
  A6L52_RS00125 (A6L52_00125) - 14831..15259 (+) 429 Protein_21 AzlC family ABC transporter permease -
  A6L52_RS00130 (A6L52_00130) pilX 17163..17636 (-) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6L52_RS00135 (A6L52_00135) pilK 17641..18234 (-) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6L52_RS00140 (A6L52_00140) pilJ 18213..19151 (-) 939 WP_002248274.1 PilW family protein Machinery gene
  A6L52_RS00145 (A6L52_00145) pilV 19148..19759 (-) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6L52_RS00150 (A6L52_00150) pilH 19783..20460 (-) 678 WP_002248272.1 GspH/FimT family pseudopilin Machinery gene
  A6L52_RS00155 (A6L52_00155) dnaB 20615..22021 (-) 1407 WP_002248271.1 replicative DNA helicase -
  A6L52_RS00160 (A6L52_00160) - 22184..22771 (+) 588 WP_002220670.1 superoxide dismutase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21725.67 Da        Isoelectric Point: 6.3911

>NTDB_id=190766 A6L52_RS00135 WP_002248275.1 17641..18234(-) (pilK) [Neisseria meningitidis strain M23413]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRFCPANSTDLCIDKKGMEYKKGTRSVSKPPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=190766 A6L52_RS00135 WP_002248275.1 17641..18234(-) (pilK) [Neisseria meningitidis strain M23413]
ATGCGCAAACAGAACGCTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCGCTGTTTATCGTGCTGATGGT
AATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATTCTACCG
ACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCACCGCGCTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

85.644

100

0.878

Multiple sequence alignment