Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CAY59_RS14655 Genome accession   NZ_CP021145
Coordinates   3086202..3086930 (+) Length   242 a.a.
NCBI ID   WP_005425318.1    Uniprot ID   -
Organism   Vibrio campbellii strain LA16-V1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3081202..3091930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAY59_RS14640 (CAY59_14475) clpC 3081638..3084211 (-) 2574 WP_086369696.1 ATP-dependent chaperone ClpB Regulator
  CAY59_RS14645 (CAY59_14480) pgeF 3084358..3085086 (-) 729 WP_038893012.1 peptidoglycan editing factor PgeF -
  CAY59_RS14650 (CAY59_14485) rluD 3085088..3086065 (-) 978 WP_005425317.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CAY59_RS14655 (CAY59_14490) comL 3086202..3086930 (+) 729 WP_005425318.1 outer membrane protein assembly factor BamD Machinery gene
  CAY59_RS14660 (CAY59_14495) - 3087073..3088542 (+) 1470 WP_045369911.1 lytic transglycosylase F -
  CAY59_RS14665 (CAY59_14500) raiA 3088919..3089245 (+) 327 WP_005425319.1 ribosome-associated translation inhibitor RaiA -
  CAY59_RS14670 (CAY59_14505) pheA 3089489..3090667 (+) 1179 WP_005533293.1 prephenate dehydratase -
  CAY59_RS14675 (CAY59_14510) yjjX 3090710..3091243 (+) 534 WP_038889003.1 inosine/xanthosine triphosphatase -
  CAY59_RS14680 (CAY59_14515) trpR 3091359..3091661 (-) 303 WP_005425333.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27847.63 Da        Isoelectric Point: 5.2063

>NTDB_id=190690 CAY59_RS14655 WP_005425318.1 3086202..3086930(+) (comL) [Vibrio campbellii strain LA16-V1]
MKHQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQTSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFNVDRSDRDPEPVKKAFDDFKKLLERYPNSPYAED
SQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKAFPDTEAARKSLEIQLEAYKQLKLDDAVARTEELIKLNP
AN

Nucleotide


Download         Length: 729 bp        

>NTDB_id=190690 CAY59_RS14655 WP_005425318.1 3086202..3086930(+) (comL) [Vibrio campbellii strain LA16-V1]
ATGAAACATCAGACTTTAACAGGCCTTTTAGCGGTATCCCTTCTGTTTGGCTGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCTGAACTGTATGCAGACGCGCAAACTTCTCTGCAAAGCGGTAACTGGCTTTCTGCCATCGAAAAATTAG
AAGCTTTGGATTCGCGTTACCCGTTTGGTGCCTACTCTGAGCAGGTACAACTTGACCTTATCTACGCGTACTACAAAAAC
GATGACCTAGCATTAGGTCTGGCAACGATCTCTCGCTTTATGCGTTTGAATCCGACTCACGAAAAAATGGACTGGGTTTT
GTACATGCGTGGTTTGAGCCACATGGCGCAAGACCGTAACTTCATGCATGACTTGTTCAACGTTGATCGTAGTGACCGTG
ATCCAGAGCCAGTGAAGAAAGCATTCGACGACTTCAAAAAGCTGCTAGAACGTTACCCGAACAGCCCATATGCGGAAGAT
TCACAGAAACGTATGGTGGCGCTAAAGAACCGTCTTGCAAACTACGATCTAGCGACGGCAGACTTCTACTTGCGTCGTGA
AGCTTGGATTGCAGCGATCAACCGTTCTCAAGAGCTTCAAAAAGCGTTCCCTGACACAGAAGCGGCGCGCAAATCACTTG
AGATTCAGTTAGAAGCCTACAAGCAATTGAAACTGGATGACGCCGTTGCAAGAACGGAAGAGCTTATCAAGCTTAACCCA
GCAAACTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.174

0.393
  comL Neisseria gonorrhoeae MS11

39.167

99.174

0.388

Multiple sequence alignment