Detailed information NTG0190689

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: CAY59_RS14640
• Genome accession: NZ_CP021145
• Coordinates: 3081638..3084211 (-)
• Length: 857 a.a.
• NCBI ID: WP_086369696.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain LA16-V1
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3076638..3089211

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CAY59_RS14640 (CAY59_14475)	clpC	3081638..3084211 (-)	2574	WP_086369696.1	ATP-dependent chaperone ClpB	Regulator
CAY59_RS14645 (CAY59_14480)	pgeF	3084358..3085086 (-)	729	WP_038893012.1	peptidoglycan editing factor PgeF	-
CAY59_RS14650 (CAY59_14485)	rluD	3085088..3086065 (-)	978	WP_005425317.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
CAY59_RS14655 (CAY59_14490)	comL	3086202..3086930 (+)	729	WP_005425318.1	outer membrane protein assembly factor BamD	Machinery gene
CAY59_RS14660 (CAY59_14495)	-	3087073..3088542 (+)	1470	WP_045369911.1	lytic transglycosylase F	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 96000.69 Da
• Isoelectric Point: 5.1146

>NTDB_id=190689 CAY59_RS14640 WP_086369696.1 3081638..3084211(-) (clpC) [Vibrio campbellii strain LA16-V1]
MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLDVDVTHLRSKLSEMLDRLPKVSGIGGD
VQLSSSMGTVFNLCDKVAQKRQDSYISSEVFLLAALEDRGPLGQLLKEMGLTEQKVSQAIEKIRGGQKVNDPNAEELRQA
LEKFTIDLTERAEQGKIDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL
DMGALVAGAKYRGEFEERLKSVLNELAKEEGNVILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDAALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYVSDRQLPDKAIDLIDEAASS
IRLQIDSKPESLDKLERKIIQLKIEQQALSNEHDEASEKRLDVLNEELNEKEREYAELEEVWNAEKAALSGTQHIKSELE
QARMDMDFARRAGDLNRMSELQYGRIPELEKQLDLATQAEMQEMTLLRNKVTDNEIAEVLSKQTGIPVSKMLEAEKEKLL
RMEEVLHKRVIGQAEAVEVVSNAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLASFMFDSEDAMVRIDMSEFMEK
HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSARIQENFATLDYQGIKNEVMDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQLERLAKRLEEKGYQLEVSEKAL
DLIAQVGFDPVYGARPLKRAIQQNVENPLAKSILAGQILPDKKVQLIVNNDQIIAHQ

Nucleotide

• Length: 2574 bp

>NTDB_id=190689 CAY59_RS14640 WP_086369696.1 3081638..3084211(-) (clpC) [Vibrio campbellii strain LA16-V1]
ATGCGTCTTGATAGATTCACAAGTAAGTTTCAAATCGCTATCTCTGATGCTCAGTCACTAGCGTTAGGGCGCGATCATCA
ATATATCGAACCTGTGCACCTAATGGTGGCATTGCTTGATCAGAACGGTAGCCCAATTCGTCCACTGCTAACCATGTTAG
ATGTTGACGTGACTCATCTACGCTCTAAATTGAGCGAAATGTTAGATCGGCTGCCTAAAGTAAGTGGCATCGGCGGTGAT
GTTCAGCTGTCTAGCTCTATGGGGACAGTTTTCAATTTGTGCGACAAAGTGGCTCAAAAGCGTCAGGACTCCTACATCTC
TTCCGAAGTCTTTTTGCTTGCAGCATTAGAAGACCGTGGCCCACTTGGTCAGCTATTAAAAGAGATGGGCTTGACCGAGC
AGAAAGTCAGTCAAGCGATCGAAAAGATCAGAGGTGGTCAAAAGGTCAATGACCCGAACGCGGAAGAACTACGCCAAGCA
TTGGAAAAGTTCACCATAGACCTAACGGAACGCGCAGAGCAGGGTAAAATAGATCCTGTTATCGGCCGTGATGATGAAAT
CCGCCGTACCATCCAAGTATTGCAGCGTCGTACCAAGAACAACCCAGTGATCATTGGTGAACCTGGTGTGGGTAAAACCG
CTATCGTAGAGGGCTTGGCTCAGCGCATCATTAATAATGAAGTACCAGAGGGGCTACGTGGTCGCCGCGTACTTTCGTTA
GATATGGGCGCACTTGTTGCAGGTGCAAAATACCGTGGTGAATTTGAAGAGCGTTTGAAATCGGTATTGAATGAACTAGC
CAAAGAAGAAGGTAACGTCATTCTATTCATTGATGAGCTTCATACTATGGTTGGCGCAGGTAAGGGCGAGGGCTCTATGG
ATGCCGGTAATATGCTAAAACCAGCATTGGCCCGTGGTGAACTCCACTGTGTGGGCGCCACTACATTGGATGAATACCGC
CAATATATAGAGAAAGATGCCGCACTTGAGCGTCGTTTCCAAAAAGTGCTGGTGGATGAGCCAACAGTAGAAGACACGAT
TGCCATTCTTCGTGGATTGAAAGAGCGTTATGAGCTTCACCACCACGTAGAGATTACCGACCCAGCGATCGTGGCTGCCG
CAAGTTTGTCGCATCGTTATGTTTCGGATCGTCAATTGCCTGATAAAGCAATCGACCTTATTGATGAAGCAGCCTCTAGC
ATTCGTCTACAGATCGACTCCAAGCCAGAGTCTTTAGACAAGCTCGAACGTAAAATCATCCAACTTAAGATCGAGCAGCA
AGCGCTGAGCAACGAGCATGATGAAGCAAGTGAAAAGCGCTTGGATGTGCTTAATGAAGAATTGAATGAAAAAGAGCGCG
AGTATGCAGAGCTAGAAGAAGTGTGGAACGCAGAAAAAGCCGCACTATCTGGCACACAACATATTAAAAGTGAGTTAGAG
CAAGCCCGAATGGATATGGACTTTGCACGCCGTGCTGGTGACCTAAACCGCATGTCCGAATTGCAATACGGCCGTATTCC
TGAACTTGAAAAGCAACTTGATCTTGCTACTCAAGCTGAAATGCAAGAAATGACTCTATTGCGGAATAAGGTGACGGACA
ACGAGATTGCAGAAGTGCTCTCTAAGCAAACGGGTATTCCGGTCTCTAAAATGCTCGAAGCAGAAAAAGAAAAACTGCTC
CGCATGGAAGAGGTACTGCACAAACGTGTGATTGGTCAGGCAGAAGCGGTTGAAGTGGTGTCTAACGCAATTCGTCGTAG
TCGAGCTGGCTTATCCGATCCAAACAAACCGATTGGTTCCTTCTTATTCTTAGGTCCAACAGGTGTGGGTAAAACAGAAC
TATGTAAGACACTCGCGAGCTTCATGTTTGATAGTGAAGATGCCATGGTACGTATCGATATGTCCGAGTTCATGGAGAAA
CACTCTGTGGCGAGATTAGTTGGTGCGCCTCCGGGTTATGTTGGCTATGAAGAAGGTGGCTATTTAACAGAAGCAGTTCG
CCGTAAACCTTATTCTGTCATCCTATTAGATGAAGTAGAGAAGGCACACCCAGATGTGTTCAATATTCTGCTGCAAGTAT
TGGATGATGGTCGACTAACTGATGGTCAGGGTAGAACGGTGGATTTCCGTAACACTGTAGTGATCATGACTTCGAACTTG
GGTTCTGCTCGTATCCAGGAGAACTTTGCGACGTTGGATTACCAAGGTATTAAGAATGAAGTAATGGATGTAGTTAGCAA
GCACTTCCGCCCAGAGTTCTTAAACCGTGTTGATGAAAGTGTGGTATTCCACCCGCTTGGTCAAGAGCACATTAAGTCGA
TTGCATCTATTCAGCTTGAGCGTCTAGCGAAACGCTTAGAAGAAAAAGGTTATCAATTAGAGGTATCCGAGAAAGCCCTC
GATTTGATTGCCCAAGTTGGTTTCGATCCTGTCTATGGTGCGCGACCTTTAAAACGTGCAATTCAACAGAATGTTGAGAA
CCCATTAGCGAAATCAATCTTGGCTGGCCAAATCTTGCCAGACAAGAAAGTACAGTTGATTGTGAACAACGACCAAATCA
TTGCTCACCAGTAA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-320)

• AAA lid domain (AAA_lid_9) (342-442)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-845)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	46.597	100	0.471
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.953	100	0.441
clpC	Lactococcus lactis subsp. cremoris KW2	46.609	80.863	0.377