Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   CAH07_RS06155 Genome accession   NZ_CP021123
Coordinates   1195956..1196960 (+) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis strain SEM-9     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1190956..1201960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS06130 (CAH07_06060) murC 1191651..1192949 (+) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -
  CAH07_RS06135 (CAH07_06065) ytxG 1193111..1193533 (+) 423 WP_003229276.1 DUF948 domain-containing protein -
  CAH07_RS06140 (CAH07_06070) ytxH 1193564..1194019 (+) 456 WP_004398549.1 YtxH domain-containing protein -
  CAH07_RS06145 (CAH07_06075) ytxJ 1194043..1194369 (+) 327 WP_101172339.1 bacillithiol system redox-active protein YtxJ -
  CAH07_RS06150 (CAH07_06080) aroX 1194605..1195681 (+) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  CAH07_RS06155 (CAH07_06085) ccpA 1195956..1196960 (+) 1005 WP_003229285.1 catabolite control protein A Regulator
  CAH07_RS06160 (CAH07_06090) motP 1197023..1197841 (+) 819 WP_014477672.1 flagellar motor protein MotP -
  CAH07_RS06165 (CAH07_06095) motS 1197831..1198559 (+) 729 WP_003229290.1 flagellar motor protein MotS -
  CAH07_RS06170 (CAH07_06100) acuC 1198570..1199733 (-) 1164 WP_015251447.1 acetoin utilization protein AcuC -
  CAH07_RS06175 (CAH07_06105) acuB 1199730..1200374 (-) 645 WP_003229294.1 acetoin utilization AcuB family protein -
  CAH07_RS06180 (CAH07_06110) acuA 1200401..1201033 (-) 633 WP_003229296.1 acetoin utilization protein acetyltransferase AcuA -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=190503 CAH07_RS06155 WP_003229285.1 1195956..1196960(+) (ccpA) [Bacillus subtilis strain SEM-9]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=190503 CAH07_RS06155 WP_003229285.1 1195956..1196960(+) (ccpA) [Bacillus subtilis strain SEM-9]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGAAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCG
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCTCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCTCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATCGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTTAGAAAGTCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503


Multiple sequence alignment