Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   CAC01_RS22675 Genome accession   NZ_CP021118
Coordinates   5341899..5342915 (+) Length   338 a.a.
NCBI ID   WP_007827388.1    Uniprot ID   A0ABD5EE38
Organism   Streptomyces sp. CLI2509 strain CLI2905     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5336899..5347915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAC01_RS22655 (CAC01_22570) - 5337331..5337750 (-) 420 WP_095684013.1 DUF2267 domain-containing protein -
  CAC01_RS22660 (CAC01_22575) - 5337935..5338375 (-) 441 WP_008748115.1 Hsp20/alpha crystallin family protein -
  CAC01_RS22665 (CAC01_22580) - 5338513..5339286 (+) 774 WP_095683167.1 type III effector protein -
  CAC01_RS22670 (CAC01_22585) dnaG 5339554..5341467 (+) 1914 WP_007827386.1 DNA primase -
  CAC01_RS22675 (CAC01_22590) rpoS 5341899..5342915 (+) 1017 WP_007827388.1 RNA polymerase sigma factor Regulator
  CAC01_RS22680 (CAC01_22595) rcrQ 5343086..5344993 (-) 1908 WP_007827390.1 ABC transporter ATP-binding protein Regulator
  CAC01_RS22685 (CAC01_22600) rcrP 5345014..5346747 (-) 1734 WP_093852960.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37515.12 Da        Isoelectric Point: 9.8399

>NTDB_id=190453 CAC01_RS22675 WP_007827388.1 5341899..5342915(+) (rpoS) [Streptomyces sp. CLI2509 strain CLI2905]
MPTQLRATTSTPQDAPPLPGVPPQRTRERTPAPPGGHAPDLFRQYLREIGRIPLLTAADEVDLARRVEAGLFAEAKLAGP
GPLDTRLALDLDRLVVLGRAAKRRLIESNLRLVVSVAKRYAGRGLTMLDLVQEGNLGLIRAVEKFDYTRGFKFSTYATWW
IRQAMSRALADQARTIRVPVHVVELINRVVRVQRGLLQERGHEPSHAEVAALLGLTKERVGEVLRLAQEPVSLHTPVGGE
DEVALGDLIEDGDAPSPPESAALLLLRRHLEDVLSTLGERERQVVQLRYGLDDGRPRTLEEIGTLFGVTRERIRQIEAKT
LAKLRSHAFADQLRGYLD

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=190453 CAC01_RS22675 WP_007827388.1 5341899..5342915(+) (rpoS) [Streptomyces sp. CLI2509 strain CLI2905]
GTGCCCACGCAGCTTCGCGCCACGACGTCCACCCCGCAGGACGCCCCGCCCCTCCCGGGCGTCCCCCCGCAGCGCACGCG
CGAGCGCACCCCCGCCCCTCCCGGCGGCCACGCGCCCGATCTCTTCCGCCAGTACTTACGCGAGATAGGCCGCATCCCGC
TCCTCACCGCCGCCGACGAAGTCGACCTCGCCCGCCGCGTCGAGGCCGGCCTCTTCGCCGAGGCGAAACTCGCCGGGCCC
GGCCCGCTCGACACCCGCCTCGCCCTCGATCTCGACCGCCTCGTCGTCCTCGGCCGCGCCGCCAAGCGCCGCCTCATCGA
GTCCAACCTCCGCCTCGTCGTCTCCGTCGCCAAGCGGTACGCGGGGCGCGGCCTGACGATGCTCGACCTCGTCCAGGAGG
GCAATCTCGGCCTCATCCGCGCCGTCGAGAAGTTCGACTACACGCGCGGCTTCAAGTTCTCCACCTACGCCACCTGGTGG
ATTCGCCAGGCGATGTCCCGCGCGCTCGCCGACCAGGCCCGCACGATCCGCGTGCCCGTGCACGTCGTCGAGCTGATCAA
CCGCGTCGTACGGGTCCAGCGCGGACTGCTCCAGGAGCGCGGCCACGAGCCGAGCCACGCGGAGGTCGCCGCCCTCCTCG
GCCTCACGAAGGAGCGCGTCGGCGAGGTCCTGCGCCTCGCGCAGGAGCCCGTCTCGCTCCACACCCCGGTCGGCGGCGAG
GACGAGGTCGCGCTCGGCGACCTCATCGAGGACGGCGACGCCCCCTCGCCCCCCGAGTCCGCCGCGCTGCTCCTGCTGCG
CCGCCACCTCGAAGACGTCCTCTCGACCCTCGGCGAGCGCGAACGCCAGGTCGTCCAGCTCCGCTACGGACTCGACGACG
GCCGCCCCCGCACCCTGGAGGAGATCGGCACCCTCTTCGGGGTCACGCGCGAACGCATCCGCCAGATCGAGGCCAAGACC
CTCGCCAAACTCCGCTCCCACGCCTTCGCCGACCAGCTCAGGGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(184-260)

Sigma-70, region 4 (Sigma70_r4)

(273-325)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(40-73)

Sigma-70 region 2 (Sigma70_r2)

(105-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABD5EE38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

43.098

87.87

0.379

Multiple sequence alignment