Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   CAC01_RS22685 Genome accession   NZ_CP021118
Coordinates   5345014..5346747 (-) Length   577 a.a.
NCBI ID   WP_093852960.1    Uniprot ID   -
Organism   Streptomyces sp. CLI2509 strain CLI2905     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 5340014..5351747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAC01_RS22675 (CAC01_22590) rpoS 5341899..5342915 (+) 1017 WP_007827388.1 RNA polymerase sigma factor Regulator
  CAC01_RS22680 (CAC01_22595) rcrQ 5343086..5344993 (-) 1908 WP_007827390.1 ABC transporter ATP-binding protein Regulator
  CAC01_RS22685 (CAC01_22600) rcrP 5345014..5346747 (-) 1734 WP_093852960.1 ABC transporter ATP-binding protein Regulator
  CAC01_RS22690 (CAC01_22605) - 5346861..5348312 (-) 1452 WP_078519030.1 FGGY family carbohydrate kinase -
  CAC01_RS22695 (CAC01_22610) - 5348585..5348878 (-) 294 WP_043257680.1 hypothetical protein -

Sequence


Protein


Download         Length: 577 a.a.        Molecular weight: 62565.66 Da        Isoelectric Point: 5.9824

>NTDB_id=190455 CAC01_RS22685 WP_093852960.1 5345014..5346747(-) (rcrP) [Streptomyces sp. CLI2509 strain CLI2905]
MLIRLLRASLAPYKRPIALLVLLQFVQTCAALYLPTLNADIIDNGVVKGDTGYIMEFGGLMLIVAVVQMAGNVGAVFYGA
RTAAALGRDVRARIFDRVQSFSAREVGQFGAPTLITRTTNDVQQVQMLVLMSFTLMVSAPIMCVGGVILALGQDVPLSSI
LLVVIPVLGGSVGLIVRKLRPLFRTLQTRLDTVNRVLREQITGNRVIRAFVRDEYEGTRFDGANGELTEVSLGTGRLFAL
MFPTVMTVVNLSSVAVVWFGSHRIDSGGMQIGALTAFLSYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLDTASSVVP
PRAGITELRRHGRLELRGAGFRFPGAEEPVLRGIDLEALPGETTAVIGSTGSGKTTLLGLVPRLFDATEGEVLVDGVDVR
EVDPALLARTVGLVPQKPYLFSGTVASNLRYGNPDASDEELWHALEVAQAKGFVEKLEHRLEAPVAQGGSNFSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGHETARATVVIVAQRVATIRDADRILVLDEGRIVGVGRHHELMETN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=190455 CAC01_RS22685 WP_093852960.1 5345014..5346747(-) (rcrP) [Streptomyces sp. CLI2509 strain CLI2905]
GTGCTCATACGACTTCTGCGGGCCTCGCTGGCCCCCTACAAACGGCCCATCGCCCTTCTCGTCCTGCTCCAGTTCGTCCA
GACCTGCGCCGCGCTCTATCTGCCCACGCTCAACGCCGACATCATCGACAACGGTGTCGTGAAGGGCGACACGGGCTACA
TCATGGAGTTCGGCGGGCTCATGCTGATCGTCGCCGTCGTGCAGATGGCGGGGAACGTCGGCGCGGTGTTCTACGGGGCG
CGTACCGCCGCCGCGCTCGGGCGGGACGTGCGCGCGCGAATATTCGACCGCGTGCAGTCCTTCTCGGCGCGCGAGGTCGG
CCAGTTCGGCGCGCCGACGCTCATCACGCGGACGACGAACGACGTGCAGCAGGTGCAGATGCTCGTCCTGATGTCGTTCA
CGCTCATGGTCTCGGCGCCGATCATGTGCGTCGGCGGTGTGATCCTCGCGCTCGGCCAGGACGTGCCGCTCTCCTCGATC
CTGCTCGTCGTGATCCCCGTGCTCGGCGGCTCGGTCGGGCTCATCGTGCGCAAGCTGCGCCCGCTGTTCCGTACGCTCCA
GACCCGTCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGGAACCGCGTCATCCGCGCCTTCGTGCGCGACG
AGTACGAGGGCACGCGCTTCGACGGCGCGAACGGTGAGCTGACGGAGGTCTCGCTCGGCACCGGGCGGCTCTTCGCGCTC
ATGTTCCCGACCGTCATGACCGTCGTGAACCTCTCCAGCGTCGCCGTCGTGTGGTTCGGCTCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGGGCGCTGACCGCGTTCCTCTCCTACCTCATGCAGATCGTGATGGCCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCGAGGAGGTCCTCGACACCGCGTCGAGCGTCGTGCCG
CCGCGGGCCGGGATCACCGAGCTGCGCCGGCACGGGCGGCTCGAACTGCGCGGCGCCGGTTTCCGCTTCCCGGGGGCCGA
GGAGCCGGTCCTGCGCGGGATCGACCTCGAAGCGCTCCCCGGCGAGACGACGGCCGTGATCGGCTCGACGGGCAGCGGCA
AGACGACGCTGCTCGGGCTCGTGCCGCGCCTGTTCGACGCGACCGAGGGCGAGGTCCTGGTCGACGGCGTGGACGTGCGC
GAGGTCGATCCCGCGCTGCTCGCCCGCACGGTCGGGCTCGTCCCGCAGAAGCCGTACCTCTTCTCGGGGACGGTCGCGAG
CAATCTGCGCTACGGGAACCCGGACGCGAGCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGGCTTCG
TGGAGAAGCTGGAGCACCGGCTGGAGGCGCCGGTGGCGCAGGGCGGCTCGAACTTCTCGGGCGGGCAGCGGCAGCGGCTC
GCGATCGCGCGCACGCTCGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCGCTCGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCGGCCACGAGACGGCGCGGGCGACGGTGGTGATCGTGGCGCAGCGCGTCGCGACGATCC
GCGACGCGGACCGCATCCTCGTGCTCGACGAGGGGCGGATCGTGGGCGTGGGGCGGCACCACGAGCTGATGGAGACCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.863

100

0.402


Multiple sequence alignment