Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CAC01_RS22680 Genome accession   NZ_CP021118
Coordinates   5343086..5344993 (-) Length   635 a.a.
NCBI ID   WP_007827390.1    Uniprot ID   -
Organism   Streptomyces sp. CLI2509 strain CLI2905     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5338086..5349993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAC01_RS22665 (CAC01_22580) - 5338513..5339286 (+) 774 WP_095683167.1 type III effector protein -
  CAC01_RS22670 (CAC01_22585) dnaG 5339554..5341467 (+) 1914 WP_007827386.1 DNA primase -
  CAC01_RS22675 (CAC01_22590) rpoS 5341899..5342915 (+) 1017 WP_007827388.1 RNA polymerase sigma factor Regulator
  CAC01_RS22680 (CAC01_22595) rcrQ 5343086..5344993 (-) 1908 WP_007827390.1 ABC transporter ATP-binding protein Regulator
  CAC01_RS22685 (CAC01_22600) rcrP 5345014..5346747 (-) 1734 WP_093852960.1 ABC transporter ATP-binding protein Regulator
  CAC01_RS22690 (CAC01_22605) - 5346861..5348312 (-) 1452 WP_078519030.1 FGGY family carbohydrate kinase -
  CAC01_RS22695 (CAC01_22610) - 5348585..5348878 (-) 294 WP_043257680.1 hypothetical protein -

Sequence

Protein


Download         Length: 635 a.a.        Molecular weight: 68708.64 Da        Isoelectric Point: 5.3186

>NTDB_id=190454 CAC01_RS22680 WP_007827390.1 5343086..5344993(-) (rcrQ) [Streptomyces sp. CLI2509 strain CLI2905]
MAAGAAAAQGLDDFKGTAKRLARRFAPYKALLTGMLALGIVSVAASVSGPKILGHATDLLFGGVIGGQLRAGQTKEQVIE
AARERGDGGFADLLKGVHFTPGQGIDFGAIGEVLLIATLVFAVGGVLMSISVRLSNRAINLMIRRLREDVQSKLSRLPLS
YFDRRQRGEVLSRATNDMDNLQQTLQQTLGQLVNSVLTIIGVLAVMFWISWLLALVALVTVPLSALVATRVGKRSQPQFV
RQWKSTGELNAHIEEMYTGHTLVKVFGRQEESAEIFREHNEALYDASNRAQFTSGVMQPLMMFVSNINYVLVAVVGGLRV
ASGALSIGDVQAFVQYSRQFSMPLTQVASMANLIQSGVASAERIFELLDADEQSADPAEPERPEKLRGRVAFEHVSFRYQ
EDKPLIEDLSLEVDPGHTVAIVGPTGAGKTTLVNLLLRFYDVTGGRITLDGVDIARMRRDDLRAGIGMVLQDTWLFGGSI
AENIAYGAAREVTREEIEEAARAAHADRFVRTLPEGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEATSSVDT
RTEVLIQKAMERLAAGRTSFVIAHRLSTIRDADTILVMENGAIVEQGSHEELLAAGGAYARLYAAQFAQAVAEVE

Nucleotide


Download         Length: 1908 bp        

>NTDB_id=190454 CAC01_RS22680 WP_007827390.1 5343086..5344993(-) (rcrQ) [Streptomyces sp. CLI2509 strain CLI2905]
ATGGCGGCCGGAGCCGCCGCGGCGCAGGGTCTCGACGACTTCAAGGGAACGGCGAAGCGGCTCGCACGCCGCTTCGCCCC
GTACAAGGCGCTCCTGACGGGGATGCTGGCGCTCGGGATAGTGAGCGTGGCGGCGTCGGTGTCGGGGCCGAAGATCCTCG
GGCACGCGACCGACCTGCTCTTCGGCGGGGTGATCGGCGGGCAGTTGCGCGCCGGGCAGACCAAGGAACAGGTCATCGAG
GCGGCGCGGGAGCGCGGTGACGGCGGTTTCGCCGACCTCCTCAAGGGGGTGCACTTCACGCCGGGCCAGGGCATCGACTT
CGGGGCGATCGGCGAGGTGCTGCTCATCGCGACGCTCGTCTTCGCGGTCGGCGGCGTGCTCATGTCGATCTCGGTGCGGC
TCTCGAACCGGGCGATCAACCTCATGATCAGGCGGCTGCGCGAGGACGTGCAGTCGAAGCTGTCGCGCCTGCCGCTGTCG
TACTTCGACCGCCGTCAGCGCGGTGAGGTGCTGAGCCGCGCGACGAACGACATGGACAACCTCCAGCAGACGCTGCAGCA
GACCCTCGGCCAGCTCGTCAACTCGGTGCTGACGATCATCGGGGTGCTCGCGGTCATGTTCTGGATCTCGTGGCTGCTCG
CGCTCGTCGCGCTCGTGACCGTGCCGCTCTCCGCGCTCGTCGCGACGCGCGTGGGCAAGCGCTCGCAGCCGCAGTTCGTG
CGGCAGTGGAAGTCGACGGGCGAGCTGAACGCGCACATCGAGGAGATGTACACGGGCCACACGCTCGTGAAGGTCTTCGG
GCGCCAGGAGGAGTCGGCGGAGATCTTCCGCGAGCACAACGAGGCGCTGTACGACGCCTCGAACCGGGCGCAGTTCACGA
GCGGTGTCATGCAGCCGCTGATGATGTTCGTCTCGAACATCAACTACGTGCTCGTCGCCGTCGTCGGCGGTCTGCGGGTC
GCCTCGGGCGCGCTGTCGATCGGTGACGTGCAGGCGTTCGTGCAGTACTCGCGGCAGTTCTCGATGCCGCTCACGCAGGT
CGCCTCGATGGCGAACCTCATCCAGTCGGGCGTCGCCTCGGCGGAGCGGATCTTCGAGCTGCTCGACGCCGACGAGCAGA
GCGCGGACCCGGCCGAGCCGGAGCGCCCCGAGAAGCTGCGCGGGCGGGTCGCCTTCGAGCACGTCTCCTTCCGCTACCAG
GAGGACAAGCCGCTCATCGAGGACCTGTCCCTGGAGGTCGACCCGGGCCACACGGTCGCGATCGTCGGCCCCACGGGCGC
GGGCAAGACGACGCTCGTCAACCTGCTGCTCCGCTTCTACGACGTGACGGGCGGGCGCATCACGCTCGACGGCGTCGACA
TCGCGCGGATGCGCCGCGACGACCTGCGCGCCGGGATAGGGATGGTGCTCCAGGACACGTGGCTCTTCGGCGGCTCGATC
GCGGAGAACATCGCGTACGGGGCCGCGCGCGAGGTCACCCGCGAGGAGATCGAGGAGGCGGCGAGGGCGGCGCACGCGGA
CCGCTTCGTGCGCACGCTCCCCGAGGGCTACGACACGGTCATCGACGACGAGGGAACGGGCGTGAGCGCGGGCGAGAAGC
AGCTCATCACGATCGCGCGCGCCTTCCTCTCGGACCCGGTGATCCTCGTGCTCGACGAGGCGACCAGCTCCGTGGACACC
CGGACCGAGGTCCTGATCCAGAAGGCGATGGAGCGCCTCGCGGCCGGGCGCACGAGTTTCGTCATCGCGCACCGGCTCTC
CACGATCCGCGACGCGGACACGATCCTCGTCATGGAGAACGGCGCGATCGTGGAGCAGGGCTCGCACGAGGAACTGCTCG
CGGCGGGCGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTCGAGTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(36-344)

ABC transporter (ABC_tran)

(407-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.291

97.323

0.392

Multiple sequence alignment