Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   B9J09_RS07145 Genome accession   NZ_CP020870
Coordinates   1432667..1433356 (-) Length   229 a.a.
NCBI ID   WP_046419884.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. pauca strain De Donno     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1427667..1438356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9J09_RS07130 (B9J09_07130) - 1429344..1429805 (-) 462 WP_046419616.1 glycine zipper 2TM domain-containing protein -
  B9J09_RS07135 (B9J09_07135) - 1430520..1431350 (+) 831 WP_010894044.1 tRNA threonylcarbamoyladenosine dehydratase -
  B9J09_RS12645 - 1431874..1432056 (+) 183 WP_162009299.1 hypothetical protein -
  B9J09_RS07145 (B9J09_07145) crp 1432667..1433356 (-) 690 WP_046419884.1 cAMP-activated global transcriptional regulator CRP Regulator
  B9J09_RS07150 (B9J09_07150) speD 1433499..1434293 (+) 795 WP_004083667.1 adenosylmethionine decarboxylase -
  B9J09_RS07155 (B9J09_07155) coq7 1434461..1435114 (-) 654 WP_046419882.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  B9J09_RS07160 (B9J09_07160) rplM 1435335..1435763 (+) 429 WP_010894037.1 50S ribosomal protein L13 -
  B9J09_RS07165 (B9J09_07165) rpsI 1435768..1436160 (+) 393 WP_046419612.1 30S ribosomal protein S9 -
  B9J09_RS07170 (B9J09_07170) - 1436378..1437667 (-) 1290 WP_010894035.1 citrate synthase -
  B9J09_RS07175 (B9J09_07175) - 1437895..1438137 (-) 243 WP_004083672.1 type B 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25573.34 Da        Isoelectric Point: 9.6366

>NTDB_id=189701 B9J09_RS07145 WP_046419884.1 1432667..1433356(-) (crp) [Xylella fastidiosa subsp. pauca strain De Donno]
MTIGNTTSVTTVRNATPPLALDNAAIERFLAHSHRRRYPNRTDVFRPGDPAGTLYYVISGSISIIAEEEDHRELILGYFG
AGEFVGEMGLFIESDAREVILRTRTQCELAEVSYERLHQLLQGSLASDAPRILYAIGMQLSKRLLFTTRKASRLAFLDVG
DRILRTLHDLARDPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTVVLYGTR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=189701 B9J09_RS07145 WP_046419884.1 1432667..1433356(-) (crp) [Xylella fastidiosa subsp. pauca strain De Donno]
ATGACTATAGGGAACACTACGAGTGTGACAACGGTACGTAACGCTACTCCGCCTTTAGCTCTCGACAATGCGGCGATCGA
GCGCTTCTTGGCTCACAGTCATCGACGCCGCTACCCCAACCGAACGGATGTGTTTAGGCCTGGTGATCCTGCTGGAACGC
TTTACTATGTTATCAGCGGGTCGATCAGCATCATTGCCGAGGAAGAAGATCATCGTGAGCTGATTCTTGGCTATTTCGGA
GCAGGTGAGTTTGTGGGTGAGATGGGTTTATTCATCGAATCCGATGCTCGCGAAGTCATCTTACGTACCCGGACTCAGTG
TGAATTGGCTGAGGTAAGTTACGAGCGCCTGCACCAACTGTTGCAAGGCAGTTTGGCGAGTGATGCGCCGCGGATTTTGT
ATGCGATAGGCATGCAGTTATCTAAGCGTTTATTGTTTACCACCCGTAAGGCGAGTCGTCTGGCTTTTCTGGATGTGGGG
GATCGGATCTTGCGCACCTTACATGATCTGGCTCGCGATCCAGAGGCAATGAGTCATCCTCAGGGTACACAGTTGAGGGT
GTCACGTCAGGAGCTGGCGCGTCTAGTTGGATGCTCGCGTGAAATGGCTGGACGTGTGCTTAAGAAGTTGCAAGCGGATG
GACTGTTACATGCGCGCGGCAAAACCGTTGTTCTGTACGGAACGCGTTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(35-122)

Bacterial regulatory proteins, crp family (Crp)

(185-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Haemophilus influenzae Rd KW20

45.411

90.393

0.41
  crp Acinetobacter baumannii D1279779

44.608

89.083

0.397
  crp Vibrio cholerae strain A1552

43.961

90.393

0.397