Detailed information    

insolico Bioinformatically predicted

Overview

Name   letS   Type   Regulator
Locus tag   B9J09_RS01750 Genome accession   NZ_CP020870
Coordinates   404452..404694 (-) Length   80 a.a.
NCBI ID   WP_157893217.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. pauca strain De Donno     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 399452..409694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9J09_RS01710 (B9J09_01710) metK 400019..401230 (+) 1212 WP_010892922.1 methionine adenosyltransferase -
  B9J09_RS01725 (B9J09_01725) - 401629..402201 (+) 573 WP_046417983.1 RNA pyrophosphohydrolase -
  B9J09_RS01730 (B9J09_01730) - 402313..402528 (+) 216 WP_031336269.1 bacterioferritin-associated ferredoxin -
  B9J09_RS01735 (B9J09_01735) bfr 402610..403074 (+) 465 WP_010892925.1 bacterioferritin -
  B9J09_RS01745 (B9J09_01745) - 404105..404455 (-) 351 WP_230949939.1 hypothetical protein -
  B9J09_RS01750 (B9J09_01750) letS 404452..404694 (-) 243 WP_157893217.1 ATP-binding protein Regulator
  B9J09_RS12825 (B9J09_01760) - 404991..405386 (-) 396 WP_010892930.1 hypothetical protein -
  B9J09_RS01765 (B9J09_01765) - 405391..407091 (-) 1701 WP_010892931.1 EAL domain-containing response regulator -
  B9J09_RS12295 - 407060..407212 (-) 153 WP_155114897.1 hypothetical protein -
  B9J09_RS01770 (B9J09_01770) - 408075..408752 (+) 678 WP_229716584.1 DUF6776 family protein -
  B9J09_RS01775 (B9J09_01775) - 408754..409191 (+) 438 WP_027700190.1 polymer-forming cytoskeletal protein -
  B9J09_RS01780 (B9J09_01780) erpA 409226..409612 (+) 387 WP_010892935.1 iron-sulfur cluster insertion protein ErpA -

Sequence

Protein


Download         Length: 80 a.a.        Molecular weight: 8928.17 Da        Isoelectric Point: 10.6006

>NTDB_id=189684 B9J09_RS01750 WP_157893217.1 404452..404694(-) (letS) [Xylella fastidiosa subsp. pauca strain De Donno]
MHQVLSNLVGNAIKFTERGRINVKLRLIGENGTHHIRRFEVHDTGICISSEQQIRLFSSFSQADTSTTRLYGSTALGLAK

Nucleotide


Download         Length: 243 bp        

>NTDB_id=189684 B9J09_RS01750 WP_157893217.1 404452..404694(-) (letS) [Xylella fastidiosa subsp. pauca strain De Donno]
TTGCACCAAGTACTTAGCAACCTGGTCGGCAACGCCATCAAATTCACCGAACGTGGCCGTATCAACGTAAAGTTACGTCT
AATTGGCGAGAACGGCACGCATCACATACGGCGTTTCGAAGTGCACGATACCGGTATCTGTATTTCTTCCGAACAGCAAA
TACGACTGTTCTCTTCGTTCAGCCAAGCTGACACTTCAACCACACGCCTATACGGGAGCACAGCGCTTGGCTTGGCAAAA
TGA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(2-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letS Legionella pneumophila strain ERS1305867

46.154

97.5

0.45
  luxQ Vibrio cholerae strain A1552

43.59

97.5

0.425
  chiS Vibrio cholerae strain A1552

36.709

98.75

0.363

Multiple sequence alignment