Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | A6B42_RS05615 | Genome accession | NZ_CP016607 |
| Coordinates | 1152494..1152973 (-) | Length | 159 a.a. |
| NCBI ID | WP_025217064.1 | Uniprot ID | W0QBW2 |
| Organism | Mannheimia varigena strain F222 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1147494..1157973
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6B42_RS05590 (A6B42_05590) | yacG | 1148399..1148584 (-) | 186 | WP_176671236.1 | DNA gyrase inhibitor YacG | - |
| A6B42_RS05595 (A6B42_05595) | coaE | 1148566..1149201 (-) | 636 | WP_178217948.1 | dephospho-CoA kinase | - |
| A6B42_RS05600 (A6B42_05600) | - | 1149233..1149889 (-) | 657 | WP_178217950.1 | prepilin peptidase | - |
| A6B42_RS05605 (A6B42_05605) | pilC | 1149893..1151089 (-) | 1197 | WP_178217952.1 | type II secretion system F family protein | Machinery gene |
| A6B42_RS05610 (A6B42_05610) | - | 1151082..1152473 (-) | 1392 | Protein_1098 | GspE/PulE family protein | - |
| A6B42_RS05615 (A6B42_05615) | pilA | 1152494..1152973 (-) | 480 | WP_025217064.1 | prepilin peptidase-dependent pilin | Machinery gene |
| A6B42_RS05620 (A6B42_05620) | radA | 1153153..1154532 (+) | 1380 | WP_178217954.1 | DNA repair protein RadA | - |
| A6B42_RS05625 (A6B42_05625) | - | 1154588..1154821 (-) | 234 | WP_025217062.1 | YgjV family protein | - |
| A6B42_RS05630 (A6B42_05630) | - | 1155048..1156331 (-) | 1284 | WP_178217956.1 | anaerobic C4-dicarboxylate transporter | - |
| A6B42_RS05635 (A6B42_05635) | - | 1156349..1157044 (-) | 696 | WP_178217958.1 | aspartate/glutamate racemase family protein | - |
Sequence
Protein
Download Length: 159 a.a. Molecular weight: 17107.53 Da Isoelectric Point: 9.0783
>NTDB_id=189648 A6B42_RS05615 WP_025217064.1 1152494..1152973(-) (pilA) [Mannheimia varigena strain F222]
MQKIVHFRPLYIRQLNKAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLRASASYKSDVELCIYNSNRLDNCSG
GTNGIQANKTSGNETKYLNSITVTKGVITVTGKGSLDGYSYTLTPTFSNNTISWSVNCKGSDTSLFPAGFCSATATPNG
MQKIVHFRPLYIRQLNKAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLRASASYKSDVELCIYNSNRLDNCSG
GTNGIQANKTSGNETKYLNSITVTKGVITVTGKGSLDGYSYTLTPTFSNNTISWSVNCKGSDTSLFPAGFCSATATPNG
Nucleotide
Download Length: 480 bp
>NTDB_id=189648 A6B42_RS05615 WP_025217064.1 1152494..1152973(-) (pilA) [Mannheimia varigena strain F222]
ATGCAAAAAATTGTACATTTTCGACCGCTTTACATTCGTCAATTAAACAAGGCGTTTACATTAATTGAGTTGATGATCGT
GATTGCGATCATTGCCATTCTTGCAACTATTGCCATTCCCTCCTACAACTCTTACACGCAAAAAGCTGCGTTATCGGAGT
TGTTGCGTGCTTCGGCTTCCTATAAATCAGATGTTGAGTTGTGTATTTATAATAGTAATAGGCTGGATAATTGCTCTGGT
GGCACGAATGGTATTCAAGCCAATAAAACGAGTGGCAATGAAACTAAATATCTCAATTCGATTACCGTAACTAAAGGCGT
GATTACCGTAACAGGTAAAGGTTCGCTTGATGGCTATAGTTATACACTGACACCAACTTTTTCCAATAATACAATTAGTT
GGTCAGTAAATTGCAAAGGGAGTGATACAAGTTTATTCCCAGCAGGTTTCTGTAGTGCTACGGCTACACCAAATGGCTAA
ATGCAAAAAATTGTACATTTTCGACCGCTTTACATTCGTCAATTAAACAAGGCGTTTACATTAATTGAGTTGATGATCGT
GATTGCGATCATTGCCATTCTTGCAACTATTGCCATTCCCTCCTACAACTCTTACACGCAAAAAGCTGCGTTATCGGAGT
TGTTGCGTGCTTCGGCTTCCTATAAATCAGATGTTGAGTTGTGTATTTATAATAGTAATAGGCTGGATAATTGCTCTGGT
GGCACGAATGGTATTCAAGCCAATAAAACGAGTGGCAATGAAACTAAATATCTCAATTCGATTACCGTAACTAAAGGCGT
GATTACCGTAACAGGTAAAGGTTCGCTTGATGGCTATAGTTATACACTGACACCAACTTTTTCCAATAATACAATTAGTT
GGTCAGTAAATTGCAAAGGGAGTGATACAAGTTTATTCCCAGCAGGTTTCTGTAGTGCTACGGCTACACCAAATGGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
65.409 |
100 |
0.654 |
| pilA | Haemophilus influenzae 86-028NP |
57.746 |
89.308 |
0.516 |
| pilA | Haemophilus influenzae Rd KW20 |
55.634 |
89.308 |
0.497 |