Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BCD20_RS06705 Genome accession   NZ_CP020835
Coordinates   1282207..1282944 (-) Length   245 a.a.
NCBI ID   WP_000197673.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN051542     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1277207..1287944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCD20_RS06675 (BCD20_06675) yfiL 1277365..1277730 (-) 366 WP_044864298.1 DUF2799 domain-containing protein -
  BCD20_RS06680 (BCD20_06680) aroF 1277940..1279010 (+) 1071 WP_044864299.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  BCD20_RS06685 (BCD20_06685) tyrA 1279021..1280142 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  BCD20_RS06690 (BCD20_06690) pheA 1280185..1281345 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  BCD20_RS25845 pheL 1281444..1281491 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  BCD20_RS06695 (BCD20_06695) raiA 1281595..1281936 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  BCD20_RS06705 (BCD20_06705) comL 1282207..1282944 (-) 738 WP_000197673.1 outer membrane protein assembly factor BamD Machinery gene
  BCD20_RS06710 (BCD20_06710) rluD 1283079..1284059 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BCD20_RS06715 (BCD20_06715) yfiH 1284056..1284787 (+) 732 WP_021553789.1 purine nucleoside phosphorylase YfiH -
  BCD20_RS06720 (BCD20_06720) clpC 1284917..1287490 (+) 2574 WP_021553788.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27843.47 Da        Isoelectric Point: 7.1587

>NTDB_id=189524 BCD20_RS06705 WP_000197673.1 1282207..1282944(-) (comL) [Escherichia coli strain CFSAN051542]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPKSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=189524 BCD20_RS06705 WP_000197673.1 1282207..1282944(-) (comL) [Escherichia coli strain CFSAN051542]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTAGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAAAAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371