Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   BA953_RS17090 Genome accession   NZ_CP016557
Coordinates   191318..193375 (-) Length   685 a.a.
NCBI ID   WP_231115551.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain 58     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 193558..194598 191318..193375 flank 183


Gene organization within MGE regions


Location: 191318..194598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA953_RS17090 (BA953_17090) cqsS 191318..193375 (-) 2058 WP_231115551.1 hybrid sensor histidine kinase/response regulator Regulator
  BA953_RS17095 (BA953_17095) - 193558..194598 (-) 1041 WP_065740104.1 IS481 family transposase -

Sequence

Protein


Download         Length: 685 a.a.        Molecular weight: 78783.24 Da        Isoelectric Point: 5.3061

>NTDB_id=189174 BA953_RS17090 WP_231115551.1 191318..193375(-) (cqsS) [Vibrio coralliilyticus strain 58]
MTAVLESVRKVYQYAEPNLTLVGWMGLLGFPTYYYVWTYLFPQPYESLTLRLFCSFLFAIIAFRHALPKHIQRYMPQYYL
ISIAICLPYFFSYMMFMNEWSTIWAMSFMASVFLHVLLVHQTRIMLLQAAISLLFAFITVYGFNFSLAMEKVVWPYLPIF
LFTYVFGNLFYFRNQVEHESKVSIAKSFGAGIAHEMRNPLSALKASFDVLSSLLPDEKSKTAEFYSMSHQELTIAREVLS
DADEVIQNGNETIDLLLTSIDENRVSTSTFRKHSLKRVTEDSLSSFAYKSAKDKQAVQFKCEQDAEVFGSDTLIKYALYN
LLKNAFYYQNVNHFQITVEIKCSDKNSTIVFRDNGVGIAPEVLENIFKDFYTFGKSGSYGLGLPFCRKVMQALGGRISCR
SELNEWTEFTLTFPHYHSARVDYIKLDLMKSKSALYVGETSVIARLLNEQSFYKGFTLNTVDLELANNREEYEFEYDLIF
IDLDAVITSPDQLAALENKLHFTEARIVFLYDENNRYHNDIERHLTIYPVEKHRMSLEPGRVLDELFFESPEPDRNLLPR
KEVRVGKTIVIADDNHSLRTYTSILLEQQGFEVIQAQNGQEVLDKLQNNLVDLVLMDIEMPQLNGLDAANAIRSSDSEYA
NIPILGHTGDSTSVAIDKIHQSGMNDYIIKPAGTEVLLDKISNWI

Nucleotide


Download         Length: 2058 bp        

>NTDB_id=189174 BA953_RS17090 WP_231115551.1 191318..193375(-) (cqsS) [Vibrio coralliilyticus strain 58]
ATGACAGCAGTTCTGGAATCAGTTCGCAAAGTATACCAGTATGCAGAACCAAACCTCACGCTCGTAGGTTGGATGGGGTT
GCTTGGCTTTCCAACTTACTACTACGTCTGGACCTACTTATTCCCTCAGCCATACGAAAGCCTGACGCTCAGGCTCTTCT
GTTCATTCCTATTCGCAATAATTGCTTTTCGGCATGCGCTCCCTAAACACATACAGCGTTATATGCCGCAATATTATCTC
ATCTCGATAGCGATCTGCCTGCCGTACTTCTTTAGCTATATGATGTTTATGAACGAATGGTCGACGATATGGGCGATGTC
GTTTATGGCTTCAGTTTTTCTCCATGTTCTGCTTGTTCATCAAACACGAATTATGCTTCTGCAAGCCGCGATTTCGTTGT
TGTTTGCTTTTATTACCGTCTACGGATTTAACTTTAGTTTGGCCATGGAGAAGGTTGTGTGGCCATATTTGCCGATTTTT
CTCTTCACATATGTGTTTGGGAACCTGTTTTACTTCCGTAATCAGGTTGAACATGAGAGTAAAGTGTCTATAGCTAAGTC
CTTTGGCGCAGGAATCGCTCATGAAATGCGTAACCCGCTAAGTGCACTGAAAGCATCGTTTGATGTATTAAGTTCCTTGT
TACCTGATGAAAAGTCCAAAACTGCTGAATTTTACTCAATGTCTCATCAGGAATTAACCATTGCGAGAGAAGTACTCAGT
GATGCGGATGAAGTCATTCAGAATGGTAATGAAACCATCGATCTTCTGTTAACTTCTATTGATGAAAACCGAGTATCAAC
GTCGACATTCAGAAAGCATTCTTTGAAACGTGTGACGGAAGATTCTCTATCCAGCTTCGCTTACAAAAGCGCAAAGGACA
AACAGGCTGTTCAGTTCAAGTGTGAACAGGATGCCGAAGTGTTTGGTAGTGATACGCTCATCAAGTATGCCTTGTATAAC
CTTCTCAAAAATGCCTTTTATTATCAGAATGTCAATCACTTCCAAATCACTGTTGAAATAAAGTGCTCCGATAAAAACAG
TACCATCGTATTTCGGGATAACGGCGTTGGTATCGCCCCTGAAGTGCTTGAAAACATTTTTAAAGATTTTTACACCTTTG
GTAAGTCAGGCAGTTATGGCCTCGGTTTACCATTTTGTCGAAAAGTGATGCAAGCTTTAGGTGGCAGAATCAGCTGTCGG
TCTGAGTTGAATGAATGGACTGAATTCACGCTGACGTTCCCTCATTATCATTCTGCGAGAGTCGATTATATAAAACTGGA
TCTAATGAAATCTAAATCAGCCCTCTATGTTGGGGAAACAAGTGTTATTGCACGGCTCCTCAATGAACAATCTTTCTACA
AAGGCTTTACCCTTAACACGGTTGACCTCGAGCTGGCAAACAATAGGGAAGAATACGAATTTGAATACGACTTGATATTC
ATCGATTTAGATGCAGTGATAACCTCACCTGATCAACTAGCAGCATTAGAGAATAAGCTTCACTTTACTGAAGCGAGAAT
CGTGTTTCTCTACGACGAGAACAACCGCTATCACAACGATATAGAAAGGCACCTTACCATTTACCCTGTTGAGAAGCATC
GAATGTCGCTAGAGCCAGGGCGTGTTTTGGACGAATTGTTCTTTGAGTCTCCTGAGCCTGACCGAAACTTACTCCCAAGA
AAAGAAGTCCGTGTGGGTAAAACGATTGTCATTGCCGACGACAATCATTCGCTTCGTACATACACGTCGATACTATTAGA
ACAGCAGGGGTTTGAGGTGATTCAAGCTCAGAACGGGCAAGAAGTGTTAGATAAACTGCAGAACAACCTTGTCGATTTAG
TGCTAATGGATATTGAGATGCCACAACTGAATGGCCTTGATGCAGCTAATGCTATTCGTTCATCAGATAGTGAGTACGCC
AATATCCCGATTTTAGGCCATACTGGTGACTCTACATCTGTTGCTATCGATAAGATTCATCAGTCAGGGATGAATGATTA
TATTATTAAGCCTGCCGGTACAGAAGTACTGCTGGATAAAATATCGAACTGGATTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(314-415)

Response regulator receiver domain (Response_reg)

(569-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

52.256

100

0.524

Multiple sequence alignment