Detailed information NTG0189166

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BA953_RS11405
• Genome accession: NZ_CP016556
• Coordinates: 2465146..2466015 (-)
• Length: 289 a.a.
• NCBI ID: WP_065741168.1
• Uniprot ID: -
• Organism: Vibrio coralliilyticus strain 58
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2460146..2471015

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BA953_RS11370 (BA953_11370)	rpsP	2461278..2461526 (+)	249	WP_005438039.1	30S ribosomal protein S16	-
BA953_RS11375 (BA953_11375)	rimM	2461556..2462104 (+)	549	WP_029236289.1	ribosome maturation factor RimM	-
BA953_RS11380 (BA953_11380)	trmD	2462132..2462875 (+)	744	WP_006958144.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BA953_RS11385 (BA953_11385)	rplS	2462917..2463270 (+)	354	WP_006958143.1	50S ribosomal protein L19	-
BA953_RS11390 (BA953_11390)	yacG	2463516..2463710 (-)	195	WP_019277521.1	DNA gyrase inhibitor YacG	-
BA953_RS11395 (BA953_11395)	zapD	2463762..2464502 (-)	741	WP_006958141.1	cell division protein ZapD	-
BA953_RS11400 (BA953_11400)	coaE	2464536..2465144 (-)	609	WP_065741167.1	dephospho-CoA kinase	-
BA953_RS11405 (BA953_11405)	pilD	2465146..2466015 (-)	870	WP_065741168.1	A24 family peptidase	Machinery gene
BA953_RS11410 (BA953_11410)	-	2466065..2467279 (-)	1215	WP_065741169.1	type II secretion system F family protein	-
BA953_RS11415 (BA953_11415)	pilB	2467288..2468934 (-)	1647	WP_065741170.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BA953_RS11420 (BA953_11420)	-	2468937..2469377 (-)	441	WP_031343346.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
BA953_RS11425 (BA953_11425)	nadC	2469605..2470492 (-)	888	WP_065741171.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32449.36 Da
• Isoelectric Point: 6.6830

>NTDB_id=189166 BA953_RS11405 WP_065741168.1 2465146..2466015(-) (pilD) [Vibrio coralliilyticus strain 58]
MDLFNYYPWLFPTLATIFGLIIGSFLNVVIHRLPQMMEREWRHECGESFPEYGIAPPHGTYNLSIPRSTCPSCKTQIRNL
DNIPVISWLLLRGKCRACQAKISPRYPLVELLSGAMSFAIAYQFELSAFAIALLFFTFVLIAATFIDFDTMLLPDQLTFP
LIWSGIALALLDFSPVSLQDSVIGAMAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQYLPVIVLLSSLVGL
VFGIIQLRLQKQGIDKAFPFGPYLAIAGWVSAMWGENIINWYFTQILGV

Nucleotide

• Length: 870 bp

>NTDB_id=189166 BA953_RS11405 WP_065741168.1 2465146..2466015(-) (pilD) [Vibrio coralliilyticus strain 58]
ATGGATCTGTTTAACTATTACCCGTGGTTGTTTCCCACACTTGCCACTATTTTTGGCCTGATCATTGGCAGTTTTCTCAA
CGTAGTAATCCACCGTTTACCACAAATGATGGAGCGAGAGTGGCGACACGAGTGTGGTGAAAGCTTCCCAGAATACGGTA
TCGCTCCTCCACACGGCACCTATAACCTCAGTATTCCTCGCTCCACCTGCCCAAGCTGTAAAACGCAAATCCGTAATCTC
GACAATATCCCGGTTATTAGCTGGTTGCTTTTGCGTGGTAAATGTCGTGCCTGTCAGGCAAAAATTAGCCCTCGCTATCC
GTTGGTTGAGTTGCTGTCAGGTGCAATGAGCTTTGCTATTGCTTATCAGTTTGAACTGAGCGCTTTTGCCATCGCCCTAC
TGTTTTTTACCTTCGTCCTGATTGCGGCAACATTCATTGATTTTGATACCATGCTGCTGCCAGACCAGCTTACCTTTCCG
CTCATTTGGTCGGGTATTGCTCTTGCCTTATTAGACTTCAGCCCGGTTTCCCTGCAAGATTCTGTTATTGGGGCTATGGC
TGGTTATTTATGTTTATGGTCTGTCTACTGGGGCTTCAAGTTACTCACTGGTAAAGAAGGCATGGGCTATGGAGATTTCA
AACTTCTTGCCGCACTAGGCGCTTGGTTAGGTTGGCAGTACTTGCCTGTTATCGTGTTACTTTCCTCATTAGTAGGCCTA
GTATTTGGCATTATTCAACTGCGACTACAAAAGCAAGGTATAGATAAAGCCTTTCCATTCGGCCCTTATCTCGCTATTGC
GGGATGGGTCAGTGCCATGTGGGGAGAGAACATCATAAATTGGTACTTCACACAAATCTTGGGGGTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	76.125	100	0.761
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	51.661	93.772	0.484
pilD	Acinetobacter nosocomialis M2	51.661	93.772	0.484
pilD	Neisseria gonorrhoeae MS11	47.735	99.308	0.474