Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BBW65_RS04995 Genome accession   NZ_CP016503
Coordinates   1055568..1056341 (-) Length   257 a.a.
NCBI ID   WP_066340569.1    Uniprot ID   A0A1B1U5Y5
Organism   Helicobacter enhydrae strain MIT 01-6242     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1050568..1061341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBW65_RS04970 (BBW65_04970) - 1051184..1052338 (-) 1155 WP_066340556.1 hypothetical protein -
  BBW65_RS04975 (BBW65_04975) - 1052338..1053072 (-) 735 WP_066340557.1 Tfp pilus assembly protein FimT/FimU -
  BBW65_RS04980 (BBW65_04980) - 1053062..1054243 (-) 1182 WP_066340560.1 hypothetical protein -
  BBW65_RS04985 (BBW65_04985) - 1054236..1055156 (-) 921 WP_066340562.1 DMT family transporter -
  BBW65_RS04990 (BBW65_04990) dprB 1055153..1055566 (-) 414 WP_083986186.1 Holliday junction resolvase RuvX Machinery gene
  BBW65_RS04995 (BBW65_04995) dprA 1055568..1056341 (-) 774 WP_066340569.1 DNA-processing protein DprA Machinery gene
  BBW65_RS05000 (BBW65_05000) - 1056341..1056520 (-) 180 WP_066340572.1 hypothetical protein -
  BBW65_RS05005 (BBW65_05005) ilvC 1056520..1057506 (-) 987 WP_066340574.1 ketol-acid reductoisomerase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28493.67 Da        Isoelectric Point: 5.7141

>NTDB_id=188678 BBW65_RS04995 WP_066340569.1 1055568..1056341(-) (dprA) [Helicobacter enhydrae strain MIT 01-6242]
MSVCSFQGKIKQFEALENPPQQLFYRGDLTLLDKVKVAIVGTRKPNTYTQVQTQALAKLIAQSGGVVVSGGALGVDILAH
QGAYPSTIMVAPTDLNHCYPATNKAWIASIYENALALSEYEANPRPQAYHFLERNRLVVALSDVVVIPQADLRSGSMRSA
EIATELNKPLFVFPHRLKESEGTDQLVYEGKAQMIFDFAVWASGFLPCVPSEQEDEVLVFCSKMPTFQEALDRFGSKMYE
YELEGKIGRKNGAFYVL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=188678 BBW65_RS04995 WP_066340569.1 1055568..1056341(-) (dprA) [Helicobacter enhydrae strain MIT 01-6242]
ATGAGCGTTTGTAGTTTTCAAGGGAAAATCAAGCAGTTTGAGGCTTTGGAAAACCCTCCACAGCAATTGTTCTATCGAGG
GGATCTCACACTGCTAGACAAAGTCAAAGTCGCGATTGTTGGCACACGCAAACCCAACACCTACACACAGGTGCAAACCC
AAGCCCTAGCCAAACTCATCGCCCAATCTGGAGGGGTTGTCGTCAGTGGCGGGGCGTTGGGGGTAGATATTTTGGCACAT
CAGGGGGCTTATCCCTCTACGATTATGGTGGCTCCGACGGATTTGAATCACTGCTACCCTGCCACCAACAAAGCTTGGAT
CGCCTCAATATATGAGAATGCTTTGGCACTCAGTGAATATGAGGCAAACCCACGCCCACAGGCTTATCATTTTTTGGAAC
GCAATCGTTTGGTGGTGGCTTTGAGCGATGTGGTGGTGATCCCACAGGCAGATTTGCGGAGTGGCTCGATGCGGAGTGCT
GAGATCGCCACAGAGCTCAACAAACCGCTTTTTGTGTTCCCTCATCGCCTCAAAGAGAGTGAGGGCACAGATCAGCTTGT
CTATGAGGGCAAGGCTCAAATGATTTTTGATTTTGCTGTGTGGGCTTCAGGGTTTTTGCCTTGTGTGCCATCTGAGCAGG
AGGATGAGGTGCTGGTGTTTTGCTCCAAAATGCCGACTTTTCAGGAGGCGTTGGATCGCTTCGGCTCCAAAATGTATGAG
TATGAGCTAGAGGGCAAGATAGGACGCAAAAATGGAGCGTTTTATGTCCTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(13-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1U5Y5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

50.607

96.109

0.486
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.121

86.77

0.444

Multiple sequence alignment