Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   BBW65_RS04990 Genome accession   NZ_CP016503
Coordinates   1055153..1055566 (-) Length   137 a.a.
NCBI ID   WP_083986186.1    Uniprot ID   -
Organism   Helicobacter enhydrae strain MIT 01-6242     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1050153..1060566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBW65_RS04970 (BBW65_04970) - 1051184..1052338 (-) 1155 WP_066340556.1 hypothetical protein -
  BBW65_RS04975 (BBW65_04975) - 1052338..1053072 (-) 735 WP_066340557.1 Tfp pilus assembly protein FimT/FimU -
  BBW65_RS04980 (BBW65_04980) - 1053062..1054243 (-) 1182 WP_066340560.1 hypothetical protein -
  BBW65_RS04985 (BBW65_04985) - 1054236..1055156 (-) 921 WP_066340562.1 DMT family transporter -
  BBW65_RS04990 (BBW65_04990) dprB 1055153..1055566 (-) 414 WP_083986186.1 Holliday junction resolvase RuvX Machinery gene
  BBW65_RS04995 (BBW65_04995) dprA 1055568..1056341 (-) 774 WP_066340569.1 DNA-processing protein DprA Machinery gene
  BBW65_RS05000 (BBW65_05000) - 1056341..1056520 (-) 180 WP_066340572.1 hypothetical protein -
  BBW65_RS05005 (BBW65_05005) ilvC 1056520..1057506 (-) 987 WP_066340574.1 ketol-acid reductoisomerase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15138.68 Da        Isoelectric Point: 7.7487

>NTDB_id=188677 BBW65_RS04990 WP_083986186.1 1055153..1055566(-) (dprB) [Helicobacter enhydrae strain MIT 01-6242]
MILACDIGLKRIGLATCIDSLCLPLPPILRKNREQASEELSNLLRKREVAVLVVGMPDGENGEHAMKKRIEHFVSLLSFG
GEIVYVDEGLSSKMAFESLGELSKKERGRKSKNGELDSLAAVIILERYLQQATKEGK

Nucleotide


Download         Length: 414 bp        

>NTDB_id=188677 BBW65_RS04990 WP_083986186.1 1055153..1055566(-) (dprB) [Helicobacter enhydrae strain MIT 01-6242]
ATCATTTTGGCTTGTGATATAGGGCTGAAACGCATAGGACTTGCGACTTGTATCGACTCGCTTTGTCTGCCTTTGCCACC
GATTCTAAGAAAAAATCGAGAACAGGCTTCAGAGGAGCTATCAAACCTTTTGCGTAAGCGTGAGGTCGCGGTTTTGGTGG
TGGGAATGCCTGATGGAGAAAATGGGGAGCACGCGATGAAAAAGCGTATCGAGCATTTTGTGTCTTTGCTGTCTTTTGGC
GGGGAGATTGTGTATGTTGATGAGGGACTAAGCTCAAAGATGGCGTTTGAATCACTAGGAGAGTTGAGCAAAAAAGAGAG
GGGGAGGAAAAGCAAAAATGGGGAGCTTGATAGCCTTGCGGCTGTGATTATTTTGGAGAGATATTTGCAACAAGCCACAA
AAGAGGGAAAATGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

51.493

97.81

0.504

Multiple sequence alignment