Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   AWQ22_RS08435 Genome accession   NZ_CP016477
Coordinates   1748826..1751987 (-) Length   1053 a.a.
NCBI ID   WP_232321552.1    Uniprot ID   -
Organism   Picosynechococcus sp. PCC 7117     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1743826..1756987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWQ22_RS08415 (AWQ22_08415) - 1744727..1745899 (+) 1173 WP_065710784.1 S-layer homology domain-containing protein -
  AWQ22_RS08420 (AWQ22_08420) hisF 1745889..1746671 (-) 783 WP_012307249.1 imidazole glycerol phosphate synthase subunit HisF -
  AWQ22_RS08425 (AWQ22_08425) - 1746878..1747174 (+) 297 WP_030006981.1 hypothetical protein -
  AWQ22_RS08430 (AWQ22_08430) - 1747171..1748763 (-) 1593 WP_065710785.1 SpoIID/LytB domain-containing protein -
  AWQ22_RS08435 (AWQ22_08435) pilL-C 1748826..1751987 (-) 3162 WP_232321552.1 hybrid sensor histidine kinase/response regulator Machinery gene
  AWQ22_RS08440 (AWQ22_08440) - 1752161..1752913 (+) 753 WP_065710786.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AWQ22_RS08445 (AWQ22_08445) - 1753092..1754330 (+) 1239 WP_065710787.1 GAF domain-containing sensor histidine kinase -
  AWQ22_RS08450 (AWQ22_08450) dapF 1754327..1755172 (-) 846 WP_065710788.1 diaminopimelate epimerase -
  AWQ22_RS08455 (AWQ22_08455) - 1755214..1755423 (+) 210 WP_062434363.1 Hfq-related RNA-binding protein -
  AWQ22_RS08460 (AWQ22_08460) - 1755488..1756402 (+) 915 WP_065710789.1 M23 family metallopeptidase -
  AWQ22_RS08465 (AWQ22_08465) - 1756712..1756954 (+) 243 WP_065710790.1 FeoA family protein -

Sequence

Protein


Download         Length: 1053 a.a.        Molecular weight: 116659.99 Da        Isoelectric Point: 4.4899

>NTDB_id=188525 AWQ22_RS08435 WP_232321552.1 1748826..1751987(-) (pilL-C) [Picosynechococcus sp. PCC 7117]
MGAPVSNNSHNEAHNYQDSEFEDELLELFEDLDAETSAPPATDFPKEIDPKVSFISFANNFEELLAFEEVTSPQSQTPQQ
ASSQNEADLEADLEALLQDTDPNQPSDTETYATESEPYFPLEDPVSPPLKRPKAISSQISPVTNGQITYYPPLEDLGQYL
EVSPSSSANSVDWQALTQLIEQNPSVPSPSPSPKKRPQITISKQTDFGELEALLQQADTMGGPPITTTSGPSTNRQRSQK
VNSFEQTMRIPVKQLDNLSNLMGELVVNRNTLEQSQEKLRQFLDNLTGQVQRLNDIGSQMQDLYERSLLERSLLASRGQS
SEYHFPPGFTDKADAPGRHRSQEYDPLEMDQFTGFHLLSQEMIELIVRVRESSSDIEFLVDDNEQVARNLRQVSTQLQEG
LTKSRMIPFAQAADRLVRPVREISLKLNKRASLNVEGREVLIDKMILEQLYDPLTHLINNAITHGIESPEVRLSKGKPAA
GVVSLKAYIQGNQIVIAIADDGAGMDSEALVHKALEKNLITPDQLSDLSQQDIYDFIFHPGFTTKAQADDFSGRGVGMDV
VRTALGSIRGTITIDSALGKGTTFTIRLPLTLNICRALFCLNRHARIALPMDGVEDMQTYTLDQVEQEGRRRYIRWRDSR
LRVYPLSNLLTLQRQIGRGSIYGGVGDPDQIPVVILRSAGNLLAIQVDQVLGEQEIVIKQIEGPIPKPAAIAGATVLGDG
TVMPVVDVLELIELAAQGRVRAKATTWQDNPALHLLVPEMVQTEPIVLIVDDSITVRELLSMSFTKAGYRVEQARDGQEA
WEKLRGGLPCELVFCDIEMPRMDGLELLSRIQKDPNLEKIPVAMLTSRGADRHRQMAAELGASAYFTKPYLEEVLLDAAQ
KMRQGDVLLPGSTKQPTVSEPGDGMGDFEPLDDASVKITAPRILIVDDSVTVRELLAITFQKAGYHVERARDGEEALEQL
LENPDFSLVFCDIEMPRLDGLALLEEIQQYPELAHIPIAMLTSRGAGRHRKIAAARGAKAYFTKPYVEDHLLEAAARLMA
GEILLDENGKVVA

Nucleotide


Download         Length: 3162 bp        

>NTDB_id=188525 AWQ22_RS08435 WP_232321552.1 1748826..1751987(-) (pilL-C) [Picosynechococcus sp. PCC 7117]
ATGGGGGCACCAGTGAGCAACAACAGTCATAATGAAGCGCATAACTATCAAGATTCCGAGTTTGAAGACGAACTCCTAGA
ACTGTTTGAAGACCTCGACGCAGAAACCTCTGCCCCCCCAGCGACCGATTTTCCCAAGGAGATCGATCCGAAAGTTTCAT
TTATCAGCTTCGCAAATAACTTTGAAGAACTTTTAGCCTTCGAGGAAGTGACCTCCCCCCAGTCCCAAACGCCTCAGCAA
GCCTCGTCCCAAAACGAAGCAGACCTCGAAGCCGATTTAGAAGCTCTTCTCCAGGATACTGATCCCAACCAACCCTCCGA
CACAGAAACTTACGCCACCGAGAGCGAACCTTATTTTCCCCTCGAAGATCCCGTTTCCCCGCCCCTCAAACGCCCCAAGG
CCATTTCCTCCCAGATCTCCCCGGTCACCAACGGTCAGATCACCTACTACCCTCCCCTAGAGGATCTCGGTCAATACCTA
GAAGTGTCACCAAGCTCGTCGGCCAACTCTGTTGACTGGCAAGCCCTCACTCAACTCATTGAACAAAATCCGAGTGTTCC
TAGCCCTAGTCCCTCTCCCAAAAAACGCCCCCAAATCACTATTTCCAAACAGACGGACTTTGGTGAATTAGAAGCCCTGC
TCCAACAGGCAGACACCATGGGAGGGCCTCCCATTACCACCACCAGCGGCCCTAGTACAAATCGTCAACGCTCCCAAAAG
GTCAACAGCTTTGAGCAGACCATGCGGATTCCCGTCAAGCAACTCGATAACCTCAGTAACTTGATGGGAGAACTCGTTGT
CAACCGCAATACCCTCGAACAAAGCCAAGAAAAACTCCGGCAATTCCTCGATAATCTCACGGGCCAAGTGCAACGGCTCA
ATGACATTGGTAGCCAGATGCAAGATCTTTATGAACGTTCTCTCCTGGAGCGTTCCCTGCTGGCCAGTCGTGGTCAAAGT
AGTGAATATCACTTTCCCCCAGGTTTCACCGATAAGGCGGATGCCCCCGGTCGTCATCGTTCCCAAGAATATGACCCCCT
AGAAATGGATCAGTTCACCGGCTTTCACCTCCTCTCCCAGGAGATGATTGAACTGATTGTGCGGGTGCGAGAATCTTCTT
CGGATATCGAATTTCTAGTCGATGACAATGAACAAGTTGCCCGTAATCTCCGGCAGGTCAGTACGCAGCTCCAGGAAGGC
TTGACTAAATCACGGATGATTCCCTTCGCCCAAGCAGCCGATCGCCTGGTGCGCCCCGTCCGAGAAATTTCCCTCAAACT
CAATAAGCGAGCCTCCCTCAATGTCGAAGGTCGAGAAGTGCTCATTGATAAAATGATCCTAGAGCAGCTCTATGATCCCC
TGACTCACCTGATCAACAACGCCATTACCCATGGGATCGAGTCCCCGGAAGTACGCCTCAGTAAAGGTAAGCCTGCGGCG
GGGGTTGTCTCCCTCAAAGCCTATATTCAGGGAAATCAAATTGTGATTGCCATTGCCGATGATGGTGCGGGGATGGATTC
TGAAGCCCTCGTCCACAAAGCCCTCGAAAAAAACCTGATTACCCCTGATCAATTATCGGATCTCAGTCAACAGGATATTT
ATGATTTTATTTTTCATCCTGGCTTTACCACCAAGGCGCAGGCCGATGACTTTTCTGGTCGGGGGGTTGGCATGGATGTG
GTCCGCACTGCCCTGGGGAGTATTCGAGGCACAATCACCATTGACTCCGCCCTGGGTAAAGGTACAACGTTTACCATCCG
GCTACCCCTCACCCTCAATATCTGCCGCGCTTTATTTTGTCTCAATCGCCACGCCCGCATTGCTCTGCCTATGGATGGGG
TTGAAGATATGCAAACCTACACCCTCGACCAAGTGGAACAGGAAGGCCGCAGACGTTATATTCGCTGGCGAGATTCTCGA
TTGCGGGTTTATCCCCTCAGTAATCTATTGACGCTCCAACGACAAATTGGGCGGGGCTCAATTTATGGAGGGGTTGGGGA
TCCTGACCAAATTCCCGTTGTGATCCTGCGCAGTGCGGGCAATCTCCTGGCGATTCAAGTGGATCAGGTGCTAGGGGAAC
AGGAAATCGTGATTAAACAGATCGAGGGGCCGATTCCGAAACCAGCGGCGATCGCCGGAGCGACAGTCCTGGGGGATGGC
ACAGTTATGCCTGTGGTTGATGTGTTAGAGCTGATTGAACTTGCGGCCCAGGGACGGGTCAGGGCCAAGGCTACCACCTG
GCAAGATAATCCAGCCTTACACTTGCTAGTGCCAGAGATGGTACAAACGGAGCCCATTGTGTTGATTGTGGATGATTCGA
TCACGGTGCGCGAACTCCTCTCGATGAGTTTCACAAAGGCTGGCTATCGGGTTGAGCAAGCCCGGGACGGCCAGGAAGCT
TGGGAAAAACTGCGGGGAGGCTTACCCTGTGAACTGGTCTTTTGCGATATTGAGATGCCGCGCATGGATGGCCTGGAGCT
ATTATCTCGCATTCAAAAAGACCCGAATTTAGAAAAAATTCCGGTGGCCATGCTGACATCAAGGGGGGCCGATCGCCACC
GACAAATGGCCGCTGAACTGGGGGCGAGTGCCTATTTCACGAAACCCTATTTAGAAGAAGTGCTGTTGGATGCGGCCCAA
AAAATGCGCCAAGGGGACGTGTTACTGCCAGGCAGTACGAAACAGCCCACGGTCTCGGAGCCTGGGGACGGGATGGGCGA
TTTTGAACCCCTAGATGATGCGTCGGTAAAAATAACGGCCCCAAGGATTTTGATTGTGGATGATTCGGTGACGGTGCGAG
AATTGTTAGCCATTACCTTCCAAAAGGCAGGCTACCATGTGGAGCGGGCCCGGGATGGAGAAGAGGCTCTAGAGCAGTTG
TTGGAAAATCCCGATTTTAGTTTGGTGTTCTGTGATATTGAGATGCCGCGCCTAGATGGTTTAGCGTTGCTCGAAGAAAT
TCAACAATATCCTGAATTGGCCCATATTCCCATTGCGATGTTGACCTCGCGCGGGGCCGGACGACACCGGAAAATTGCGG
CGGCACGGGGGGCAAAGGCCTATTTCACAAAGCCCTATGTGGAAGATCATTTGCTAGAAGCAGCGGCCCGGTTAATGGCT
GGGGAAATTTTACTAGACGAAAATGGTAAGGTGGTGGCGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(923-1034)

Response regulator receiver domain (Response_reg)

(767-878)

CheW-like domain (CheW)

(599-733)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(452-591)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(246-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

52.145

99.62

0.519

Multiple sequence alignment