Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   A4W80_RS10595 Genome accession   NZ_CP016470
Coordinates   1271351..1272652 (-) Length   433 a.a.
NCBI ID   WP_336272982.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain TMW 1.595     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1266351..1277652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W80_RS06530 (A4W80_06470) - 1266518..1267462 (-) 945 WP_076786860.1 hypothetical protein -
  A4W80_RS06535 (A4W80_06475) - 1267545..1269263 (-) 1719 WP_056966011.1 ribonuclease J -
  A4W80_RS06540 (A4W80_06480) rpsO 1269466..1269735 (-) 270 WP_004271112.1 30S ribosomal protein S15 -
  A4W80_RS06545 (A4W80_06485) rpsT 1270012..1270266 (+) 255 WP_004271117.1 30S ribosomal protein S20 -
  A4W80_RS06550 (A4W80_06490) holA 1270322..1271350 (-) 1029 WP_089542075.1 DNA polymerase III subunit delta -
  A4W80_RS10595 comEC 1271351..1272652 (-) 1302 WP_336272982.1 ComEC/Rec2 family competence protein Machinery gene
  A4W80_RS06565 - 1272613..1273463 (-) 851 Protein_1278 ComEC/Rec2 family competence protein -
  A4W80_RS06570 (A4W80_06500) - 1273604..1274092 (-) 489 WP_004270740.1 ComE operon protein 2 -
  A4W80_RS06575 (A4W80_06505) comEA 1274151..1274768 (-) 618 WP_253733344.1 helix-hairpin-helix domain-containing protein Machinery gene
  A4W80_RS06580 (A4W80_06510) - 1274899..1275945 (-) 1047 WP_080563410.1 SepM family pheromone-processing serine protease -
  A4W80_RS06585 (A4W80_06515) coaD 1275947..1276441 (-) 495 WP_065825725.1 pantetheine-phosphate adenylyltransferase -
  A4W80_RS06590 (A4W80_06520) rsmD 1276453..1277007 (-) 555 WP_004270750.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  A4W80_RS06595 (A4W80_06525) - 1277013..1277303 (-) 291 WP_004270748.1 YlbG family protein -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 48534.80 Da        Isoelectric Point: 9.5150

>NTDB_id=188496 A4W80_RS10595 WP_336272982.1 1271351..1272652(-) (comEC) [Latilactobacillus curvatus strain TMW 1.595]
MAAVFINQYGGLLSYLMAFGLIYQRRHGTFTTAFWLGLLSLPVCLRFNYRWHILTILINGIVAPIFLPVMLGLIMVAICL
WPVSHMIVWLEEGLLTTLYKGLAWIATFPYATITFGKIQLIPLFLIVIGTLWLMASTGRRAKWGWGAVISLYVISFIGIH
FNPVGRVIMFDIGQGDSLLIQQPFNRHNLLIDTGGRLALPQEKWQRRQIVSRAEKVTVNYLYSCGIDHLEAIALSHQDAD
HIGDLNEIMQHIRVKRLICAAGLPQNRQFQRQVRPHLTKVTIEPYLADQHFMIGHQQINVLAPVVAGPGGNADSLVLQAQ
IGGASWLFTGDLEKAGEVAIVDRYPQLRVDYLKVGHHGSQTASDPQSIATWQVKGALISAGRHNRYGHPHAATLQTLKRA
NVPFWNTADCGMLEWRYGFGQVPMIKTTLKDCD

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=188496 A4W80_RS10595 WP_336272982.1 1271351..1272652(-) (comEC) [Latilactobacillus curvatus strain TMW 1.595]
ATGGCAGCCGTATTTATTAATCAGTATGGGGGATTGCTGAGCTATCTGATGGCTTTTGGATTGATTTATCAGCGGCGCCA
TGGTACTTTTACAACGGCATTTTGGCTAGGCTTGTTAAGTTTACCGGTGTGCTTGCGGTTTAATTATCGTTGGCATATCT
TGACGATTTTGATTAATGGGATTGTCGCGCCGATTTTCTTACCAGTCATGTTGGGTTTGATTATGGTAGCGATTTGCTTA
TGGCCTGTTAGTCATATGATAGTTTGGTTAGAAGAAGGCCTGCTAACGACGCTGTATAAAGGATTAGCTTGGATTGCAAC
GTTCCCATATGCGACAATTACTTTCGGTAAAATCCAGCTAATACCACTCTTTTTAATTGTGATAGGCACACTATGGTTGA
TGGCAAGTACTGGTCGGCGAGCAAAGTGGGGCTGGGGGGCTGTTATCAGCCTGTATGTCATTAGTTTTATTGGTATCCAC
TTTAATCCGGTTGGCCGCGTGATTATGTTTGATATCGGGCAAGGCGATAGCCTGTTGATTCAACAACCCTTCAATCGACA
TAACCTGTTAATTGACACCGGCGGCCGACTAGCTTTACCGCAAGAAAAGTGGCAACGGCGGCAAATTGTGAGTCGGGCGG
AAAAAGTAACAGTTAATTACCTCTACAGCTGTGGCATTGATCATTTAGAGGCAATCGCATTATCGCATCAGGATGCTGAT
CATATAGGGGACTTAAATGAAATTATGCAACATATCCGAGTTAAACGGTTGATTTGTGCTGCGGGCTTACCGCAAAACCG
GCAGTTTCAACGGCAAGTGCGGCCGCATCTTACAAAAGTTACAATTGAGCCTTATTTGGCGGACCAACATTTTATGATTG
GTCACCAACAAATCAATGTGTTAGCGCCAGTGGTGGCCGGACCAGGCGGGAATGCTGACTCACTCGTTTTGCAAGCGCAA
ATTGGTGGTGCGAGTTGGTTATTTACTGGTGATTTAGAAAAAGCGGGTGAAGTGGCAATCGTTGATCGCTACCCACAATT
ACGCGTTGATTACCTAAAGGTGGGTCACCATGGCAGTCAAACGGCGAGTGATCCCCAGTCAATTGCGACGTGGCAGGTAA
AAGGGGCGTTGATTTCTGCGGGACGCCATAATCGTTATGGTCATCCACATGCCGCAACGTTGCAGACTTTAAAACGTGCG
AACGTCCCATTTTGGAATACGGCTGACTGTGGGATGCTGGAATGGCGCTATGGTTTTGGCCAAGTGCCAATGATTAAAAC
AACACTAAAGGATTGTGACTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(30-137)

Metallo-beta-lactamase superfamily (Lactamase_B)

(173-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

64.583

99.769

0.644

Multiple sequence alignment