Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   A4W80_RS06575 Genome accession   NZ_CP016470
Coordinates   1274151..1274768 (-) Length   205 a.a.
NCBI ID   WP_253733344.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain TMW 1.595     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1269151..1279768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W80_RS06540 (A4W80_06480) rpsO 1269466..1269735 (-) 270 WP_004271112.1 30S ribosomal protein S15 -
  A4W80_RS06545 (A4W80_06485) rpsT 1270012..1270266 (+) 255 WP_004271117.1 30S ribosomal protein S20 -
  A4W80_RS06550 (A4W80_06490) holA 1270322..1271350 (-) 1029 WP_089542075.1 DNA polymerase III subunit delta -
  A4W80_RS10595 comEC 1271351..1272652 (-) 1302 WP_336272982.1 ComEC/Rec2 family competence protein Machinery gene
  A4W80_RS06565 - 1272613..1273463 (-) 851 Protein_1278 ComEC/Rec2 family competence protein -
  A4W80_RS06570 (A4W80_06500) - 1273604..1274092 (-) 489 WP_004270740.1 ComE operon protein 2 -
  A4W80_RS06575 (A4W80_06505) comEA 1274151..1274768 (-) 618 WP_253733344.1 helix-hairpin-helix domain-containing protein Machinery gene
  A4W80_RS06580 (A4W80_06510) - 1274899..1275945 (-) 1047 WP_080563410.1 SepM family pheromone-processing serine protease -
  A4W80_RS06585 (A4W80_06515) coaD 1275947..1276441 (-) 495 WP_065825725.1 pantetheine-phosphate adenylyltransferase -
  A4W80_RS06590 (A4W80_06520) rsmD 1276453..1277007 (-) 555 WP_004270750.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  A4W80_RS06595 (A4W80_06525) - 1277013..1277303 (-) 291 WP_004270748.1 YlbG family protein -
  A4W80_RS06600 (A4W80_06530) - 1277323..1278411 (-) 1089 WP_065825727.1 CAP-associated domain-containing protein -
  A4W80_RS06605 (A4W80_06535) - 1278424..1279611 (-) 1188 WP_004270744.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22279.53 Da        Isoelectric Point: 9.6704

>NTDB_id=188481 A4W80_RS06575 WP_253733344.1 1274151..1274768(-) (comEA) [Latilactobacillus curvatus strain TMW 1.595]
MIILLGGGVFWQHSRQQRFLSTNQQLMAQSTKRKVKAKPVKQKKSVSKGGFVDIKGAVAHPGIYPICVAKTRLFEVLKQA
GDVTEAADTSQLNLAQTLSDQLIIYVPTKGEAVQAEELVKAVDEPQAATDNQAGASPISTDAKINLNQADATQLQTLNGI
GPKKAEQIIAYRDEQGQFKQIEDLQKVGGIGPKTFEQLRPQICVN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=188481 A4W80_RS06575 WP_253733344.1 1274151..1274768(-) (comEA) [Latilactobacillus curvatus strain TMW 1.595]
GTGATAATTTTACTTGGTGGTGGTGTGTTTTGGCAGCATAGTCGGCAACAACGTTTTCTATCAACCAATCAACAATTGAT
GGCGCAATCAACTAAGCGAAAAGTGAAGGCAAAACCCGTCAAACAGAAGAAAAGCGTCTCAAAAGGTGGGTTTGTCGATA
TCAAAGGCGCTGTGGCACATCCAGGGATTTATCCGATTTGTGTTGCAAAGACGCGTTTATTTGAGGTGCTGAAACAAGCG
GGGGATGTGACCGAAGCAGCGGATACGAGTCAGTTGAACTTAGCGCAAACATTGAGTGACCAACTTATTATCTATGTGCC
AACTAAGGGAGAAGCGGTGCAAGCCGAAGAATTAGTGAAAGCGGTAGACGAGCCACAGGCTGCGACTGACAATCAAGCGG
GAGCCAGTCCGATATCAACTGATGCTAAAATCAACCTAAACCAAGCGGATGCGACACAATTGCAAACGCTAAATGGCATC
GGTCCTAAAAAAGCTGAACAAATAATTGCATATCGGGATGAGCAAGGGCAGTTTAAACAAATCGAAGATCTTCAAAAAGT
TGGGGGAATTGGGCCGAAAACGTTTGAACAATTACGGCCACAAATTTGTGTTAATTAG

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(52-97)

Helix-hairpin-helix motif (HHH_3)

(142-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Latilactobacillus sakei subsp. sakei 23K

62.673

100

0.663
  comEA Staphylococcus aureus MW2

34.884

100

0.366
  comEA Bacillus subtilis subsp. subtilis str. 168

37.563

96.098

0.361

Multiple sequence alignment