Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   A4W81_RS05560 Genome accession   NZ_CP016465
Coordinates   1095099..1097141 (-) Length   680 a.a.
NCBI ID   WP_337962200.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1090099..1102141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W81_RS05535 (A4W81_05430) - 1090155..1091102 (-) 948 WP_011374764.1 hypothetical protein -
  A4W81_RS05540 (A4W81_05435) - 1091191..1092909 (-) 1719 WP_011374765.1 ribonuclease J -
  A4W81_RS05545 (A4W81_05440) rpsO 1093138..1093407 (-) 270 WP_011374766.1 30S ribosomal protein S15 -
  A4W81_RS05550 (A4W81_05445) rpsT 1093686..1093940 (+) 255 WP_011374767.1 30S ribosomal protein S20 -
  A4W81_RS05555 (A4W81_05450) holA 1094009..1095037 (-) 1029 WP_011374768.1 DNA polymerase III subunit delta -
  A4W81_RS05560 (A4W81_05455) comEC 1095099..1097141 (-) 2043 WP_337962200.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A4W81_RS05565 (A4W81_05460) - 1097295..1097783 (-) 489 WP_011374770.1 ComE operon protein 2 -
  A4W81_RS05570 (A4W81_05465) comEA 1097841..1098548 (-) 708 WP_232320763.1 helix-hairpin-helix domain-containing protein Machinery gene
  A4W81_RS05575 (A4W81_05470) - 1098620..1099666 (-) 1047 WP_337962201.1 SepM family pheromone-processing serine protease -
  A4W81_RS05580 (A4W81_05475) coaD 1099668..1100165 (-) 498 WP_011374773.1 pantetheine-phosphate adenylyltransferase -
  A4W81_RS05585 (A4W81_05480) rsmD 1100178..1100732 (-) 555 WP_011374774.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  A4W81_RS05590 (A4W81_05485) - 1100737..1101027 (-) 291 WP_076632420.1 YlbG family protein -
  A4W81_RS05595 (A4W81_05490) - 1101051..1102070 (-) 1020 WP_337962202.1 CAP-associated domain-containing protein -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 76987.18 Da        Isoelectric Point: 10.0861

>NTDB_id=188416 A4W81_RS05560 WP_337962200.1 1095099..1097141(-) (comEC) [Latilactobacillus sakei strain TMW 1.3]
MPCLRGRFWISYHSVTQPQQPVAQYFKVQPDAIQVAGDSVQLTAIGQQDGQTIKAYYRCQTFAEKRRWQQVRHPVLFYGE
KDFKRIQGATNQNEFDYARFLAQQKRCFYQLTLAKKTTFALRRPSSGLDWLHYWRQTCALYLRKLPTALRFHAQTLLLGL
REAQVDHYQVVLGHLGIIHLLSLSGLHVFYLVQVIRWCATYCRIPREWLNCMLFGLLPVYALLVGGTTSISRAIALILSR
LLCKQLGIRQSRLDSWSLVLLVNLFWQPYLLHSMGGILSYLMAFALIYIGEGSTFKVAYWLSLLSLPVCLRFNYRWHVLT
IMMNALVTPIYLPIVLGLVIVASVMLPVSNLVVNGCEWLLQLIYKGLGLVVQIPHAMITFGKIPLLPLLLIVTVSLLLID
GQAISNQWRKRLKRTLVSLYLASFLAIHFNPTGRVVMFDIGQGDSLLIQTPFNRHQLLIDTGGRLALPQAAWQRRAQVSR
AEKVTVNYLYSQGVDHIDAVALSHQDADHIGDLNQILKQIRVDRIICAAGLPQNRQFQRQIRPFLATVQIEPYLAGAAFK
VGSQKFNVLAPTKPGKGENSDSLVLQAQIGGTSWLFTGDLEQEGERAIIERYPQLTVDYLKVGHHGSKTASDPTVIKKLH
LKGALISTGRENRYGHPHQETLTTLQAAKVPYWLTAQQGC

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=188416 A4W81_RS05560 WP_337962200.1 1095099..1097141(-) (comEC) [Latilactobacillus sakei strain TMW 1.3]
ATGCCTTGTTTACGGGGCCGCTTTTGGATAAGCTATCATAGTGTGACGCAACCGCAACAACCGGTAGCACAGTACTTTAA
AGTGCAACCCGATGCGATTCAAGTAGCGGGCGATAGTGTCCAATTAACGGCAATCGGCCAACAAGATGGTCAGACTATTA
AGGCTTATTATCGCTGCCAAACGTTCGCCGAGAAGCGGCGATGGCAGCAAGTACGACACCCCGTTTTGTTCTATGGGGAA
AAAGATTTTAAACGTATACAGGGTGCTACCAATCAAAATGAGTTTGATTATGCCCGTTTTTTAGCGCAACAGAAGCGCTG
CTTTTACCAACTGACGTTAGCCAAAAAAACAACTTTTGCGCTGAGACGCCCTAGTAGCGGTTTGGATTGGCTACATTATT
GGCGCCAAACGTGCGCACTGTATTTACGTAAGTTACCAACAGCACTACGGTTTCATGCGCAGACGTTACTATTAGGTTTG
CGGGAAGCGCAAGTTGACCATTACCAGGTTGTTTTGGGCCACTTAGGGATTATTCATCTCTTAAGTCTATCAGGGTTGCA
CGTGTTTTATTTAGTGCAAGTCATTCGGTGGTGTGCGACTTATTGCCGCATACCGCGTGAGTGGTTAAACTGTATGTTAT
TTGGGCTATTGCCGGTATATGCCTTACTGGTTGGTGGTACGACAAGCATTAGTCGCGCGATTGCGCTTATTTTATCCCGG
TTACTTTGCAAACAGTTGGGCATTCGGCAATCAAGGTTAGATAGTTGGAGTTTAGTATTACTGGTCAATTTATTCTGGCA
GCCTTATTTGCTACATAGTATGGGCGGGATTTTAAGTTATTTGATGGCCTTTGCGCTCATTTATATTGGTGAGGGTAGCA
CTTTTAAAGTTGCTTACTGGCTAAGTTTATTGAGTTTGCCGGTTTGCTTACGCTTTAATTATCGCTGGCATGTGCTGACG
ATAATGATGAATGCCTTGGTAACGCCTATCTATCTGCCAATTGTGCTAGGTTTGGTGATTGTAGCGAGTGTGATGTTACC
TGTTAGCAATCTAGTGGTTAACGGATGTGAGTGGCTGTTACAGTTGATTTACAAAGGCTTAGGACTAGTTGTTCAAATTC
CCCATGCGATGATTACGTTTGGTAAAATACCATTATTACCGTTACTATTGATTGTGACGGTCAGTCTCTTGTTAATCGAT
GGCCAGGCAATTAGTAATCAATGGCGTAAACGGCTGAAACGCACATTGGTAAGTTTGTATCTGGCTAGTTTTTTGGCGAT
TCATTTTAATCCGACTGGTCGGGTGGTCATGTTTGATATTGGTCAAGGTGATAGTCTGTTGATTCAGACGCCGTTTAACC
GGCATCAGCTTTTAATCGATACTGGTGGTCGCCTAGCGCTACCGCAAGCAGCTTGGCAACGGCGAGCGCAGGTTTCACGA
GCGGAAAAAGTAACGGTTAATTATCTCTATAGCCAAGGAGTAGATCACATTGATGCGGTGGCACTTTCTCATCAGGATGC
CGATCATATTGGTGATTTGAACCAGATTTTAAAACAAATTCGTGTTGATCGAATCATTTGTGCTGCCGGATTACCGCAAA
ATCGGCAATTTCAAAGACAAATTCGACCATTTTTAGCAACGGTTCAGATAGAACCCTATTTAGCCGGGGCCGCTTTTAAA
GTGGGATCACAAAAATTTAACGTCTTAGCACCGACTAAGCCGGGAAAAGGCGAAAATAGTGATTCGTTAGTCTTACAGGC
ACAAATTGGTGGGACTAGCTGGCTTTTTACAGGAGATCTAGAACAAGAAGGTGAACGGGCAATTATCGAGCGGTATCCAC
AATTAACCGTCGATTATTTAAAAGTTGGCCATCATGGTAGTAAAACGGCTAGTGACCCCACCGTGATTAAAAAATTGCAC
TTAAAAGGCGCATTAATCTCAACCGGCAGAGAGAATCGTTATGGTCATCCGCACCAGGAAACTTTGACGACTTTGCAAGC
GGCCAAAGTGCCTTATTGGCTAACGGCGCAGCAGGGATGTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(441-649)

Competence protein (Competence)

(156-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

99.555

99.118

0.987

Multiple sequence alignment