Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   VSVS05_RS12405 Genome accession   NZ_CP016414
Coordinates   2724448..2725080 (+) Length   210 a.a.
NCBI ID   WP_005597159.1    Uniprot ID   A0A7W2ITN8
Organism   Vibrio scophthalmi strain VS-05     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2719448..2730080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSVS05_RS12380 (VSVS05_02530) - 2719495..2721414 (+) 1920 WP_009386387.1 ABC transporter ATP-binding protein -
  VSVS05_RS12385 (VSVS05_02531) - 2721414..2721905 (+) 492 WP_065545763.1 TIGR02444 family protein -
  VSVS05_RS12390 (VSVS05_02532) - 2721911..2722885 (+) 975 WP_065545764.1 hydrolase -
  VSVS05_RS12395 (VSVS05_02533) - 2722928..2723140 (+) 213 WP_005597157.1 YheU family protein -
  VSVS05_RS12400 (VSVS05_02534) - 2723335..2724204 (+) 870 WP_005597158.1 phosphoribulokinase -
  VSVS05_RS12405 (VSVS05_02536) crp 2724448..2725080 (+) 633 WP_005597159.1 cAMP-activated global transcriptional regulator CRP Regulator
  VSVS05_RS12410 (VSVS05_02537) - 2725237..2726028 (-) 792 WP_065545765.1 DUF1338 domain-containing protein -
  VSVS05_RS12415 (VSVS05_02538) astD 2726139..2727596 (-) 1458 WP_065545766.1 succinylglutamate-semialdehyde dehydrogenase -
  VSVS05_RS12420 (VSVS05_02539) astA 2727623..2728642 (-) 1020 WP_065545767.1 arginine N-succinyltransferase -
  VSVS05_RS12425 (VSVS05_02540) - 2728703..2729918 (-) 1216 Protein_2381 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23681.48 Da        Isoelectric Point: 7.8388

>NTDB_id=188164 VSVS05_RS12405 WP_005597159.1 2724448..2725080(+) (crp) [Vibrio scophthalmi strain VS-05]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSSQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=188164 VSVS05_RS12405 WP_005597159.1 2724448..2725080(+) (crp) [Vibrio scophthalmi strain VS-05]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTAATCCACGCGGGCGAGAAAGCAGAAACTTTGTACTACATTGTTAAAGGTTCTGTTGCCGTACTTATTAAAG
ATGAAGAAGGTAAGGAGATGATCCTTTCTTACCTAAACCAAGGTGATTTCATCGGTGAGCTTGGTCTATTTGAAGAAGAT
CAAGAGCGTACCGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCGGAAATCTCGTTCAAAAAATTCCGTCAGTTGAT
TCAGGTAAACCCTGATATCCTAATGCGTCTGTCTTCACAGATGGCTCGTCGTCTACAAGTGACTAGCCAAAAAGTAGGCG
ACCTAGCCTTCCTAGACGTAACTGGCCGTATTGCACAAACGCTACTAAACCTAGCGAAACAACCAGATGCAATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAGATCGGTCAGATTGTTGGCTGTTCTCGTGAAACCGTTGGTCGTAT
CTTGAAGATGCTGGAAGAGCAGAACCTAATCTCTGCTCACGGTAAGACTATCGTTGTTTACGGTACGCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2ITN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment