Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   vm_RS05655 Genome accession   NZ_CP016383
Coordinates   1163035..1165278 (+) Length   747 a.a.
NCBI ID   WP_070381606.1    Uniprot ID   -
Organism   Vibrio mimicus strain SCCF01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1158035..1170278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vm_RS05630 (VM_05635) - 1158440..1159015 (-) 576 WP_000999599.1 hypothetical protein -
  vm_RS05635 (VM_05640) lolC 1159191..1160399 (+) 1209 WP_070382563.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  vm_RS05640 (VM_05645) lolD 1160392..1161078 (+) 687 WP_001061285.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  vm_RS05645 (VM_05650) lolE 1161079..1162323 (+) 1245 WP_070381605.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  vm_RS05650 (VM_05655) - 1162496..1163026 (-) 531 WP_005515139.1 DUF2062 domain-containing protein -
  vm_RS05655 (VM_05660) comEC 1163035..1165278 (+) 2244 WP_070381606.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  vm_RS05660 (VM_05665) msbA 1165309..1167057 (+) 1749 WP_000052158.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  vm_RS05665 (VM_05670) lpxK 1167060..1168067 (+) 1008 WP_070382564.1 tetraacyldisaccharide 4'-kinase -
  vm_RS05670 (VM_05675) - 1168048..1168227 (+) 180 WP_000350068.1 Trm112 family protein -
  vm_RS05675 (VM_05680) kdsB 1168227..1168982 (+) 756 WP_070381607.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  vm_RS05680 (VM_05685) - 1169046..1170278 (-) 1233 WP_070381608.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 84382.51 Da        Isoelectric Point: 8.8454

>NTDB_id=187685 vm_RS05655 WP_070381606.1 1163035..1165278(+) (comEC) [Vibrio mimicus strain SCCF01]
MTLLSNYWSLISFSITVLSAPYWPWMPTWGWAWFCLILTGLLGYHRTSRKFLGFALAILTIVLHGNLMRDQSNTLYQAGP
DIIIKGKVDSFFAKTRYAYEGLVLIHEVNGQTLNSLMRPRIRLVAPIPLQPNDQFEFSVTLKPVVGRLNETGFDLEAHYM
AHSLVARASVKPNTAYQIVQQSGLRSSLLFQLDALTHTSPFQGLIRALTFGERSGIDEQEWQALRNSGLIHLVAISGLHI
GIAFSFGYLLGAGVMRLHAKLLWSPFVFGALLAVLYAWLAGFTIPTQRALIMCLLNVALVILGFPLSALKRILLTLCAVL
LWSPFASLSNSFWMSFLAVAIVLYQLASQGKRKAWWKALLLAQISLVCLMAPVTAYFFGGLSITSVLYNLVFIPWFSVVI
VPALFLGLALTVTIPTWAELYWPWVDWTFLPLDWALQFADVGWVVIPQSIQGLIAALVVLSLLYRVMSLRACALSLSIVG
LWWWFPSITPFWRMDVLDVGHGLAIVIEQNGRAIIYDTGSSWPGGSYAQNVIEPILQQRGIRRLDGLILSHLDNDHAGDW
QNLAKRWQPSWIRTSQVGVEFVPCIRGESWQWQSLHFDVLWPPQLVSRAYNQHSCVIRMTDAQFNHSVLLSGDVTAMGEW
LLARDGVPLQSDVMIVPHHGSKTSSTAEFIAKVEPQLAIASLAKDNRWNLPNQQVVERYQNQQVQWLDTGQKGQISLFFY
QEQMDWFAQRGLGWEPWYRHMLRKGVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=187685 vm_RS05655 WP_070381606.1 1163035..1165278(+) (comEC) [Vibrio mimicus strain SCCF01]
ATGACTCTCTTGTCGAATTACTGGTCGCTAATTTCGTTTTCGATCACCGTGCTTTCTGCTCCTTATTGGCCGTGGATGCC
AACATGGGGCTGGGCTTGGTTTTGCCTTATCTTGACGGGTTTGCTCGGTTATCACCGTACAAGCCGAAAATTCCTTGGCT
TCGCGTTGGCCATACTAACTATCGTGCTACATGGCAACCTTATGCGAGATCAATCCAACACGCTCTATCAAGCAGGCCCG
GATATTATCATAAAAGGTAAGGTTGACAGCTTTTTTGCGAAAACTCGTTACGCTTATGAGGGTTTAGTCTTAATTCACGA
GGTGAATGGTCAAACCTTAAACAGCCTCATGAGGCCTCGTATTCGTCTAGTTGCACCTATTCCGTTGCAGCCCAATGATC
AATTCGAATTCTCTGTAACGCTTAAACCTGTTGTTGGTCGCCTCAATGAAACGGGCTTTGATTTGGAAGCCCATTACATG
GCTCACTCTTTGGTCGCGCGAGCCAGTGTTAAACCCAATACTGCTTATCAAATTGTGCAACAGAGTGGCCTAAGGTCAAG
TTTGTTATTTCAACTCGATGCTTTGACTCACACCAGCCCGTTTCAAGGGCTGATACGAGCGCTAACATTTGGGGAGAGAA
GTGGTATTGATGAGCAAGAGTGGCAGGCACTGCGTAACAGCGGCTTAATCCACTTAGTTGCGATTTCTGGTCTGCATATT
GGTATCGCGTTCAGTTTCGGCTATTTACTGGGAGCTGGCGTGATGCGCTTGCATGCCAAGCTGCTTTGGTCCCCTTTTGT
GTTTGGCGCTTTGCTTGCGGTGTTGTATGCATGGCTAGCAGGTTTCACCATACCGACTCAACGTGCGCTAATCATGTGCT
TACTCAATGTGGCATTGGTGATCTTGGGTTTTCCTCTTTCGGCTTTAAAGCGGATTTTGCTTACCTTATGCGCCGTTTTA
CTTTGGTCGCCATTCGCGTCGCTCTCAAATAGCTTTTGGATGTCGTTTTTAGCTGTCGCGATTGTGCTTTATCAATTAGC
CAGTCAGGGTAAACGCAAAGCTTGGTGGAAAGCTCTATTGCTAGCACAAATCTCCCTCGTCTGTTTAATGGCACCGGTTA
CAGCATACTTTTTCGGCGGGTTAAGTATTACGTCGGTTTTGTACAATTTGGTTTTTATACCGTGGTTCTCCGTGGTGATC
GTTCCCGCTTTGTTTTTGGGCTTGGCACTCACAGTCACAATCCCCACTTGGGCTGAGCTTTATTGGCCTTGGGTGGATTG
GACTTTTCTGCCACTTGATTGGGCTCTGCAATTTGCGGATGTGGGTTGGGTAGTGATTCCACAAAGTATACAAGGCCTAA
TTGCTGCGTTAGTGGTGCTCAGTTTGCTGTATCGAGTGATGAGCCTACGAGCCTGTGCCTTATCGTTAAGCATCGTTGGC
TTATGGTGGTGGTTTCCTTCCATTACACCGTTTTGGCGTATGGATGTATTGGATGTGGGGCATGGCTTAGCGATAGTGAT
TGAGCAAAATGGCAGGGCTATTATCTACGATACGGGCAGCAGTTGGCCGGGAGGAAGTTACGCACAAAACGTCATTGAAC
CGATTTTGCAGCAGCGTGGAATTCGTCGATTGGATGGCTTGATTTTGAGCCATCTCGATAACGATCATGCGGGCGATTGG
CAAAATCTAGCCAAACGTTGGCAACCAAGTTGGATACGCACAAGCCAAGTTGGTGTGGAATTTGTTCCTTGTATACGTGG
TGAAAGTTGGCAATGGCAATCTTTGCATTTCGATGTGCTATGGCCGCCGCAGTTAGTCAGCCGAGCTTACAATCAGCATT
CGTGTGTGATCCGTATGACCGATGCTCAGTTTAACCATTCAGTGTTGCTTTCGGGTGATGTCACCGCAATGGGGGAGTGG
TTGCTCGCACGCGATGGAGTGCCACTGCAAAGTGATGTGATGATAGTGCCGCATCACGGCAGTAAAACTTCATCAACCGC
TGAGTTCATTGCGAAAGTTGAGCCACAGTTAGCGATTGCTTCGTTGGCCAAAGATAACCGCTGGAATTTGCCTAACCAGC
AAGTGGTGGAACGTTATCAAAACCAGCAAGTTCAGTGGCTAGATACGGGGCAAAAAGGGCAGATTAGCCTGTTTTTCTAT
CAAGAACAGATGGATTGGTTTGCCCAGCGCGGGCTTGGCTGGGAGCCTTGGTATAGGCATATGCTGCGTAAAGGAGTAGA
ATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-676)

Domain of unknown function (DUF4131) (DUF4131)

(24-172)

Competence protein (Competence)

(208-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

82.463

100

0.825
  comEC Vibrio campbellii strain DS40M4

42.042

100

0.424
  comEC Vibrio parahaemolyticus RIMD 2210633

41.434

100

0.418

Multiple sequence alignment