Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | BA894_RS12690 | Genome accession | NZ_CP016351 |
| Coordinates | 2831351..2832220 (+) | Length | 289 a.a. |
| NCBI ID | WP_065297365.1 | Uniprot ID | - |
| Organism | Vibrio natriegens strain CCUG 16374 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2826351..2837220
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BA894_RS12670 (BA894_12670) | nadC | 2826776..2827663 (+) | 888 | WP_065297361.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BA894_RS12675 (BA894_12675) | - | 2827922..2828341 (+) | 420 | WP_065297362.1 | type IV pilin protein | - |
| BA894_RS12680 (BA894_12680) | pilB | 2828344..2830029 (+) | 1686 | WP_065297363.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BA894_RS12685 (BA894_12685) | pilC | 2830060..2831283 (+) | 1224 | WP_065297364.1 | type II secretion system F family protein | Machinery gene |
| BA894_RS12690 (BA894_12690) | pilD | 2831351..2832220 (+) | 870 | WP_065297365.1 | prepilin peptidase | Machinery gene |
| BA894_RS12695 (BA894_12695) | coaE | 2832221..2832835 (+) | 615 | WP_014232954.1 | dephospho-CoA kinase | - |
| BA894_RS12700 (BA894_12700) | zapD | 2832862..2833602 (+) | 741 | WP_014232955.1 | cell division protein ZapD | - |
| BA894_RS12705 (BA894_12705) | yacG | 2833676..2833870 (+) | 195 | WP_065297366.1 | DNA gyrase inhibitor YacG | - |
| BA894_RS12710 (BA894_12710) | rplS | 2834233..2834586 (-) | 354 | WP_005379971.1 | 50S ribosomal protein L19 | - |
| BA894_RS12715 (BA894_12715) | trmD | 2834627..2835388 (-) | 762 | WP_014232957.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| BA894_RS12720 (BA894_12720) | rimM | 2835416..2835964 (-) | 549 | WP_014232958.1 | ribosome maturation factor RimM | - |
| BA894_RS12725 (BA894_12725) | rpsP | 2835995..2836243 (-) | 249 | WP_005379962.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32322.39 Da Isoelectric Point: 6.4408
>NTDB_id=187260 BA894_RS12690 WP_065297365.1 2831351..2832220(+) (pilD) [Vibrio natriegens strain CCUG 16374]
MEVFQYYPWLFVVFAVVFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYNIESPKEVLTLSVPRSSCQQCGTPIRIR
DNIPVISWLILKGKCHNCSAPISARYPLVEILTAACSGYVAFHFGFSYFTIALIFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALFEVSPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQALPMIILLSSIVGV
IFGIIQLRLQKKGIEKAFPFGPYLAIAGWVSLLWGDQILNWYFTSILGA
MEVFQYYPWLFVVFAVVFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYNIESPKEVLTLSVPRSSCQQCGTPIRIR
DNIPVISWLILKGKCHNCSAPISARYPLVEILTAACSGYVAFHFGFSYFTIALIFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALFEVSPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQALPMIILLSSIVGV
IFGIIQLRLQKKGIEKAFPFGPYLAIAGWVSLLWGDQILNWYFTSILGA
Nucleotide
Download Length: 870 bp
>NTDB_id=187260 BA894_RS12690 WP_065297365.1 2831351..2832220(+) (pilD) [Vibrio natriegens strain CCUG 16374]
ATGGAAGTATTTCAGTACTACCCGTGGTTATTCGTTGTATTCGCCGTGGTTTTTGGTTTGATCGTGGGAAGTTTTCTCAA
TGTCGTTATCTATCGACTTCCAAAAATCATGGAGCTGGAATGGCGCCGTGAATGTGCTGAGTCTTTTCCTGAATACAATA
TTGAATCACCTAAAGAAGTACTCACATTAAGCGTACCCCGCTCCTCTTGCCAACAGTGCGGGACTCCGATTCGCATTCGC
GATAACATTCCAGTGATCAGTTGGCTAATTCTAAAAGGTAAATGCCACAACTGTAGCGCCCCGATCAGCGCCAGATACCC
ACTTGTAGAAATACTGACGGCAGCCTGCTCTGGCTATGTTGCGTTTCATTTTGGATTCAGCTATTTCACTATTGCGCTAA
TATTCTTTACTTTCATTCTGATCGCAGCGACGTTTATCGATCTCGATACCATGCTGCTGCCCGATCAATTAACATTGCCA
TTAACTTGGGCTGGCATTGCTCTAGCATTGTTCGAAGTTAGTCCTGTTAGTCTGCAAGATGCCGTGATTGGTGCAATCGC
TGGCTATTTATGTCTCTGGTCTGTTTATTGGGGCTTTAAATTGCTCACAGGCAAGGAAGGCATGGGCTATGGCGACTTTA
AGCTACTCGCAGCGCTTGGCGCATGGCTGGGTTGGCAAGCTTTACCAATGATCATTTTGCTTTCTTCCATCGTAGGCGTC
ATATTTGGAATAATTCAGCTACGATTGCAGAAGAAAGGGATCGAAAAGGCCTTCCCTTTCGGTCCTTACTTAGCGATTGC
CGGATGGGTAAGTTTACTCTGGGGTGATCAAATTCTAAATTGGTATTTCACATCAATTCTAGGAGCGTAA
ATGGAAGTATTTCAGTACTACCCGTGGTTATTCGTTGTATTCGCCGTGGTTTTTGGTTTGATCGTGGGAAGTTTTCTCAA
TGTCGTTATCTATCGACTTCCAAAAATCATGGAGCTGGAATGGCGCCGTGAATGTGCTGAGTCTTTTCCTGAATACAATA
TTGAATCACCTAAAGAAGTACTCACATTAAGCGTACCCCGCTCCTCTTGCCAACAGTGCGGGACTCCGATTCGCATTCGC
GATAACATTCCAGTGATCAGTTGGCTAATTCTAAAAGGTAAATGCCACAACTGTAGCGCCCCGATCAGCGCCAGATACCC
ACTTGTAGAAATACTGACGGCAGCCTGCTCTGGCTATGTTGCGTTTCATTTTGGATTCAGCTATTTCACTATTGCGCTAA
TATTCTTTACTTTCATTCTGATCGCAGCGACGTTTATCGATCTCGATACCATGCTGCTGCCCGATCAATTAACATTGCCA
TTAACTTGGGCTGGCATTGCTCTAGCATTGTTCGAAGTTAGTCCTGTTAGTCTGCAAGATGCCGTGATTGGTGCAATCGC
TGGCTATTTATGTCTCTGGTCTGTTTATTGGGGCTTTAAATTGCTCACAGGCAAGGAAGGCATGGGCTATGGCGACTTTA
AGCTACTCGCAGCGCTTGGCGCATGGCTGGGTTGGCAAGCTTTACCAATGATCATTTTGCTTTCTTCCATCGTAGGCGTC
ATATTTGGAATAATTCAGCTACGATTGCAGAAGAAAGGGATCGAAAAGGCCTTCCCTTTCGGTCCTTACTTAGCGATTGC
CGGATGGGTAAGTTTACTCTGGGGTGATCAAATTCTAAATTGGTATTTCACATCAATTCTAGGAGCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
88.542 |
99.654 |
0.882 |
| pilD | Vibrio cholerae strain A1552 |
73.264 |
99.654 |
0.73 |
| pilD | Acinetobacter baumannii D1279779 |
53.43 |
95.848 |
0.512 |
| pilD | Acinetobacter nosocomialis M2 |
53.069 |
95.848 |
0.509 |
| pilD | Neisseria gonorrhoeae MS11 |
46.377 |
95.502 |
0.443 |