Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   BA893_RS05315 Genome accession   NZ_CP016349
Coordinates   1158894..1161152 (+) Length   752 a.a.
NCBI ID   WP_065299373.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16373     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1153894..1166152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA893_RS05290 (BA893_05290) - 1154247..1154816 (-) 570 WP_065296580.1 PilZ domain-containing protein -
  BA893_RS05295 (BA893_05295) lolC 1155068..1156276 (+) 1209 WP_065296581.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  BA893_RS05300 (BA893_05300) lolD 1156269..1156976 (+) 708 WP_020332845.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  BA893_RS05305 (BA893_05305) lolE 1156979..1158223 (+) 1245 WP_065299372.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  BA893_RS05310 (BA893_05310) - 1158376..1158885 (-) 510 WP_014231286.1 DUF2062 domain-containing protein -
  BA893_RS05315 (BA893_05315) comEC 1158894..1161152 (+) 2259 WP_065299373.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BA893_RS05320 (BA893_05320) msbA 1161184..1162932 (+) 1749 WP_014231288.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  BA893_RS05325 (BA893_05325) lpxK 1162936..1163943 (+) 1008 WP_065299374.1 tetraacyldisaccharide 4'-kinase -
  BA893_RS05330 (BA893_05330) - 1163924..1164103 (+) 180 WP_014231290.1 Trm112 family protein -
  BA893_RS05335 (BA893_05335) kdsB 1164103..1164861 (+) 759 WP_065299375.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84563.49 Da        Isoelectric Point: 8.3720

>NTDB_id=187201 BA893_RS05315 WP_065299373.1 1158894..1161152(+) (comEC) [Vibrio natriegens strain CCUG 16373]
MTLSEKSCTLALFVASIVSSAWWPIMPDWRWLLLGIITTGSIIKLRRGLISIGVILGLMVVIIHGNVLEYQRQALFNVGE
NSTITGKVDSSFNQISHGYEGLVTIKQVGDQSLLPFLKPKVRFITTFPIPVNSEFTTTAQVKPIIGLRNEAGFDAEKQAM
GSGILARMIVTGDAHWIIRNGRSVRQSIINLVMDDISHLDHFPLISALVFADRSWLSGDDWQGLRDSGLLHLASISGLHI
GMAFSFGFLLGVSVRSVIPRYQVVPSITGLTVALCYAWLADFSLPTTRAVSVCVIYIVLKYFLVHWSTWRVLLLAVAFQL
LIQPFASFSMSFWLSYLSVGMVLLVINFVRFNNSSWRGKLRTLFVTQLALSVFVIPISGYFFSGFSLSSIAYNLVFIPWF
GFVVVPLMFIALSTSLLLPAFSPIVWQLMDFSLWPLSESLQYAFGTWQPLSLELTWILFSLCTFLVFKRLLLWQGWLLLC
VITIIISSWNGQKNTSWRIDVLDVGHGLAVLVEKEGKALIYDTGKSWPEGSVAEQVIIPVLHRRGFREVDTLVLSHSDND
HAGGRQVIETHLKPTHKRSSQDFSGYQPCVSGDNWTWQQLDIEVLWPPQMVTRAYNPHSCVFRLRDRESDFSMLFTGDIE
SISEWILLREPEKLSSDVMLVPHHGSKSSSNPLFIHAVSPTLAVASLAKNNQWGMPADKVVTSYLNAGALWLDTGEGGQV
TIRVTKDKWDFVTKRSDTFEPWYRQMLRKGLE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=187201 BA893_RS05315 WP_065299373.1 1158894..1161152(+) (comEC) [Vibrio natriegens strain CCUG 16373]
ATGACTCTCTCAGAAAAAAGTTGCACCTTGGCGTTATTTGTCGCAAGCATTGTCTCATCGGCATGGTGGCCGATAATGCC
AGATTGGCGCTGGCTGCTGCTGGGAATAATTACCACTGGTTCAATAATTAAATTACGTCGTGGCTTAATTAGCATAGGCG
TAATTTTGGGCTTAATGGTAGTCATCATCCACGGCAATGTATTGGAGTATCAGCGACAAGCCCTTTTTAATGTAGGGGAG
AATAGTACCATAACTGGCAAAGTTGACAGCTCTTTTAATCAAATAAGTCATGGATATGAAGGACTCGTGACGATAAAACA
AGTGGGTGATCAAAGTCTGTTACCTTTTCTTAAACCTAAAGTCCGTTTTATCACCACCTTTCCTATCCCTGTTAACAGTG
AATTTACGACCACGGCTCAGGTAAAGCCCATTATTGGGTTACGTAACGAAGCGGGCTTCGACGCTGAAAAGCAGGCAATG
GGAAGTGGTATTTTAGCCAGAATGATTGTGACTGGCGATGCGCACTGGATTATTCGTAACGGACGTTCTGTACGTCAGTC
GATAATCAATCTGGTAATGGATGATATCTCCCATCTAGACCACTTTCCGTTAATCAGTGCTCTGGTATTTGCTGATAGAA
GCTGGCTTTCTGGTGATGACTGGCAAGGGCTGAGAGACAGTGGATTATTGCACCTGGCCTCTATCTCCGGGCTGCACATT
GGAATGGCTTTTAGCTTTGGCTTTTTGCTCGGTGTAAGTGTTCGCTCCGTTATCCCGCGTTATCAAGTGGTGCCTTCAAT
CACGGGGTTAACCGTCGCGCTATGTTATGCCTGGCTCGCTGATTTTTCTCTGCCAACCACTCGCGCCGTATCGGTTTGTG
TCATCTACATTGTTCTAAAATACTTTTTGGTTCACTGGAGTACCTGGAGAGTGTTGCTACTGGCGGTTGCTTTTCAGTTA
CTTATTCAGCCTTTCGCATCTTTTAGTATGAGTTTCTGGTTGTCTTACCTCTCTGTAGGTATGGTGCTGTTGGTCATTAA
CTTTGTGCGGTTCAATAACAGTAGCTGGCGAGGAAAACTGCGAACCTTGTTTGTGACTCAACTTGCCTTGAGTGTATTTG
TCATACCTATCAGTGGCTATTTTTTCTCTGGTTTCAGCTTATCGTCCATCGCTTATAACCTTGTGTTTATCCCATGGTTT
GGGTTTGTCGTCGTTCCTTTGATGTTTATCGCGTTATCTACTTCTTTATTACTACCCGCATTCTCGCCAATAGTTTGGCA
ATTGATGGATTTCTCTTTATGGCCGTTAAGTGAATCTCTTCAGTATGCCTTTGGTACGTGGCAACCATTGTCGCTAGAAC
TTACGTGGATACTGTTTTCTCTCTGTACTTTCTTGGTTTTTAAGCGGTTATTGCTTTGGCAGGGTTGGCTATTGCTGTGC
GTTATTACCATCATCATTTCAAGTTGGAATGGGCAAAAAAATACCAGTTGGCGAATCGATGTTCTCGATGTTGGTCATGG
TCTTGCCGTTTTGGTAGAAAAAGAGGGTAAAGCTCTGATTTACGATACTGGAAAATCCTGGCCGGAGGGCAGTGTTGCGG
AGCAGGTGATTATACCTGTGTTACATCGCAGAGGATTTAGAGAGGTTGATACCTTGGTTCTCAGTCATTCGGACAATGAC
CACGCAGGAGGGAGGCAAGTGATTGAAACGCACCTCAAGCCGACCCATAAACGCAGCAGCCAAGATTTTAGTGGGTATCA
ACCTTGTGTGAGCGGTGATAATTGGACGTGGCAGCAACTCGATATCGAAGTGCTCTGGCCACCCCAAATGGTCACTCGAG
CCTACAATCCTCACTCTTGTGTCTTTAGACTCAGAGACCGAGAATCTGATTTTTCCATGCTTTTTACTGGCGATATTGAG
TCGATTAGTGAGTGGATACTTCTTCGTGAGCCTGAAAAATTATCTAGTGATGTGATGCTCGTTCCTCATCACGGTAGCAA
AAGTTCCTCCAATCCTCTTTTTATCCATGCAGTCTCTCCAACATTAGCGGTAGCATCACTGGCGAAAAACAATCAGTGGG
GAATGCCTGCTGATAAGGTAGTAACCTCGTATCTCAACGCAGGGGCGCTATGGCTTGATACTGGCGAGGGTGGGCAAGTT
ACTATCCGAGTAACGAAAGATAAGTGGGATTTTGTAACCAAACGCAGTGATACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGGTTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-474)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

67.021

100

0.67
  comEC Vibrio campbellii strain DS40M4

63.431

100

0.634
  comEC Vibrio cholerae strain A1552

38.992

100

0.391

Multiple sequence alignment