Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   BA891_RS13675 Genome accession   NZ_CP016347
Coordinates   3008892..3009524 (+) Length   210 a.a.
NCBI ID   WP_065302956.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16371     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3003892..3014524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA891_RS13655 (BA891_13655) - 3005680..3006168 (+) 489 WP_014233185.1 TIGR02444 family protein -
  BA891_RS13660 (BA891_13660) - 3006337..3007344 (+) 1008 WP_065297459.1 hydrolase -
  BA891_RS13665 (BA891_13665) - 3007432..3007644 (+) 213 WP_065302955.1 YheU family protein -
  BA891_RS13670 (BA891_13670) - 3007782..3008651 (+) 870 WP_014233188.1 phosphoribulokinase -
  BA891_RS13675 (BA891_13675) crp 3008892..3009524 (+) 633 WP_065302956.1 cAMP-activated global transcriptional regulator CRP Regulator
  BA891_RS13680 (BA891_13680) - 3009625..3010416 (-) 792 WP_065302957.1 DUF1338 domain-containing protein -
  BA891_RS13685 (BA891_13685) astD 3010802..3012259 (-) 1458 WP_014233190.1 succinylglutamate-semialdehyde dehydrogenase -
  BA891_RS13690 (BA891_13690) astA 3012288..3013307 (-) 1020 WP_014233191.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23705.54 Da        Isoelectric Point: 7.8388

>NTDB_id=187184 BA891_RS13675 WP_065302956.1 3008892..3009524(+) (crp) [Vibrio natriegens strain CCUG 16371]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLPAQMARRLQVTSQKVGDLAFLDVTGRITQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=187184 BA891_RS13675 WP_065302956.1 3008892..3009524(+) (crp) [Vibrio natriegens strain CCUG 16371]
ATGGTTCTAGGTAAACCTCAAACCGACCCGACATTAGAGTGGTTTCTTTCACACTGTCACATTCATAAGTACCCTTCAAA
GAGCACGCTGATTCACGCAGGTGAAAAAGCTGAAACCTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGAGACTTTATTGGTGAACTTGGTCTATTCGAGGAAGAC
CAAGAGCGCACAGCTTGGGTTCGAGCTAAATCTCCTTGCGAAGTTGCTGAGATTTCTTTCAAGAAATTCCGTCAGCTTAT
CCAAGTAAACCCAGACATCCTAATGCGTCTTCCTGCGCAGATGGCTCGTCGCCTTCAAGTAACCAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATAACTCAGACGCTTCTGAACCTTGCAAAACAACCAGACGCGATGACTCAC
CCAGATGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTTGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAATCTAATCTCTGCGCACGGTAAAACTATCGTAGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.143

100

0.971
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.115

99.048

0.467

Multiple sequence alignment