Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CPA47_RS02010 Genome accession   NZ_CP020495
Coordinates   440545..441177 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain 103     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 435545..446177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPA47_RS01985 (CPA47_02115) yhfG 435677..435844 (+) 168 WP_000736860.1 YhfG family protein -
  CPA47_RS01990 (CPA47_02120) fic 435834..436436 (+) 603 WP_001280641.1 putative adenosine monophosphate-protein transferase Fic -
  CPA47_RS01995 (CPA47_02125) pabA 436468..437031 (+) 564 WP_001521451.1 aminodeoxychorismate synthase component 2 -
  CPA47_RS02000 (CPA47_02130) argD 437117..438337 (+) 1221 WP_000963771.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  CPA47_RS02005 (CPA47_02135) yhfK 438404..440494 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  CPA47_RS02010 (CPA47_02140) crp 440545..441177 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  CPA47_RS02015 (CPA47_02150) yhfA 441479..441883 (+) 405 WP_001148908.1 OsmC family protein -
  CPA47_RS02020 (CPA47_02155) prkB 441938..442807 (-) 870 WP_001274680.1 phosphoribulokinase -
  CPA47_RS02025 (CPA47_02160) yheU 442861..443079 (-) 219 WP_000907085.1 YheU family protein -
  CPA47_RS02030 (CPA47_02165) yheT 443073..444095 (-) 1023 WP_001521449.1 hydrolase -
  CPA47_RS02035 (CPA47_02170) yheS 444095..446008 (-) 1914 WP_020232893.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=186984 CPA47_RS02010 WP_000242755.1 440545..441177(-) (crp) [Escherichia coli strain 103]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=186984 CPA47_RS02010 WP_000242755.1 440545..441177(-) (crp) [Escherichia coli strain 103]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGCCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATAGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467