Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   FORC37_RS13950 Genome accession   NZ_CP016321
Coordinates   2842439..2843446 (-) Length   335 a.a.
NCBI ID   WP_017419656.1    Uniprot ID   A0A087I1V6
Organism   Vibrio vulnificus strain FORC_037     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2837439..2848446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC37_RS13925 (FORC37_2517) aroK 2838256..2838774 (-) 519 WP_011079357.1 shikimate kinase AroK -
  FORC37_RS13930 (FORC37_2518) pilQ 2838976..2840760 (-) 1785 WP_017419660.1 type IV pilus secretin PilQ Machinery gene
  FORC37_RS13935 (FORC37_2519) pilP 2840774..2841286 (-) 513 WP_038940290.1 pilus assembly protein PilP Machinery gene
  FORC37_RS13940 (FORC37_2520) pilO 2841276..2841866 (-) 591 WP_011079354.1 type 4a pilus biogenesis protein PilO Machinery gene
  FORC37_RS13945 (FORC37_2521) pilN 2841859..2842449 (-) 591 WP_038940289.1 PilN domain-containing protein Machinery gene
  FORC37_RS13950 (FORC37_2522) pilM 2842439..2843446 (-) 1008 WP_017419656.1 type IV pilus assembly protein PilM Machinery gene
  FORC37_RS13955 (FORC37_2523) - 2843586..2846099 (+) 2514 WP_045629545.1 penicillin-binding protein 1A -
  FORC37_RS13960 (FORC37_2524) oxyR 2846168..2847067 (-) 900 WP_039549251.1 DNA-binding transcriptional regulator OxyR -
  FORC37_RS13965 (FORC37_2525) - 2847341..2847613 (+) 273 WP_017419653.1 DUF3624 domain-containing protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37654.05 Da        Isoelectric Point: 6.3873

>NTDB_id=186898 FORC37_RS13950 WP_017419656.1 2842439..2843446(-) (pilM) [Vibrio vulnificus strain FORC_037]
MGKPFVTGIDIGHRSLKAVILKPYGEHYALLGYKEIIIKDGIFSDNHTLNHQEIVNSLKELKKELPLFRYQVSLAVPDSS
VISKMLSIDAELDGREREFAILQAFAHQSPFPVDELSIDYVQLVEETSKTNHSYQVYATKKEVVESRVRVAEEVGLKPVL
VDVHAHSLCNILTLAAERHPDKASYCLLDVGYDTTSLVMSRRNEPPLVKEFAYGVSHLNASIGDDLTSPDAHEKTDIFNK
ELTERVRRQLQLFQSMDSQSKVNGLWICGEGAITPLLSETLQRKLSLECEVLNPLALFEQKTAKRKRRIVDWHHFSVAAG
LAIGGIQWLEDSHAA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=186898 FORC37_RS13950 WP_017419656.1 2842439..2843446(-) (pilM) [Vibrio vulnificus strain FORC_037]
ATGGGTAAACCGTTCGTTACCGGAATTGATATTGGTCATCGTAGCCTCAAGGCTGTCATTCTGAAACCTTATGGAGAGCA
CTACGCCCTGTTAGGGTACAAAGAAATAATCATTAAAGACGGTATTTTCTCAGATAACCACACTCTGAATCATCAAGAAA
TTGTCAATAGCCTGAAAGAACTGAAGAAGGAGTTGCCTCTTTTCCGTTATCAGGTGTCACTGGCGGTACCCGATAGTTCA
GTGATTAGTAAGATGTTATCGATCGATGCGGAGTTGGATGGTCGAGAACGAGAGTTCGCTATCCTTCAGGCGTTTGCACA
TCAGTCGCCATTTCCTGTCGATGAATTATCGATTGATTATGTCCAATTGGTCGAAGAAACCAGCAAAACGAATCATAGCT
ATCAAGTTTACGCCACCAAAAAAGAGGTGGTGGAAAGCCGAGTGCGTGTCGCAGAAGAAGTGGGACTGAAACCCGTGCTG
GTAGATGTACATGCGCATAGCCTGTGCAACATCTTAACGTTAGCGGCAGAGCGCCATCCAGACAAAGCCAGCTATTGCTT
GTTGGATGTGGGTTATGACACCACCTCTTTGGTGATGTCGCGTCGCAACGAACCACCTTTGGTTAAAGAATTTGCCTATG
GAGTGTCTCACCTCAATGCGTCGATAGGCGACGATCTGACTTCTCCTGATGCTCATGAGAAAACCGACATCTTTAATAAA
GAGCTGACAGAGCGAGTTCGTCGGCAATTGCAGTTGTTCCAATCCATGGATAGCCAAAGCAAAGTGAATGGCCTTTGGAT
CTGCGGTGAAGGTGCGATTACGCCGTTGTTGAGTGAAACTTTGCAGAGAAAGCTGAGTTTGGAGTGTGAAGTCCTTAATC
CTCTGGCTCTATTTGAGCAAAAAACGGCGAAAAGAAAGCGCCGTATTGTTGACTGGCACCATTTTTCGGTCGCCGCGGGA
TTAGCGATTGGTGGCATTCAGTGGCTGGAGGATAGCCATGCAGCATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087I1V6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

53.134

100

0.531
  pilM Vibrio cholerae strain A1552

48.974

100

0.499

Multiple sequence alignment