Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   FORC37_RS13945 Genome accession   NZ_CP016321
Coordinates   2841859..2842449 (-) Length   196 a.a.
NCBI ID   WP_038940289.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_037     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2836859..2847449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC37_RS13920 (FORC37_2516) aroB 2837132..2838223 (-) 1092 WP_088428126.1 3-dehydroquinate synthase -
  FORC37_RS13925 (FORC37_2517) aroK 2838256..2838774 (-) 519 WP_011079357.1 shikimate kinase AroK -
  FORC37_RS13930 (FORC37_2518) pilQ 2838976..2840760 (-) 1785 WP_017419660.1 type IV pilus secretin PilQ Machinery gene
  FORC37_RS13935 (FORC37_2519) pilP 2840774..2841286 (-) 513 WP_038940290.1 pilus assembly protein PilP Machinery gene
  FORC37_RS13940 (FORC37_2520) pilO 2841276..2841866 (-) 591 WP_011079354.1 type 4a pilus biogenesis protein PilO Machinery gene
  FORC37_RS13945 (FORC37_2521) pilN 2841859..2842449 (-) 591 WP_038940289.1 PilN domain-containing protein Machinery gene
  FORC37_RS13950 (FORC37_2522) pilM 2842439..2843446 (-) 1008 WP_017419656.1 type IV pilus assembly protein PilM Machinery gene
  FORC37_RS13955 (FORC37_2523) - 2843586..2846099 (+) 2514 WP_045629545.1 penicillin-binding protein 1A -
  FORC37_RS13960 (FORC37_2524) oxyR 2846168..2847067 (-) 900 WP_039549251.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22658.89 Da        Isoelectric Point: 7.6441

>NTDB_id=186897 FORC37_RS13945 WP_038940289.1 2841859..2842449(-) (pilN) [Vibrio vulnificus strain FORC_037]
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGIQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSSFLKEVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=186897 FORC37_RS13945 WP_038940289.1 2841859..2842449(-) (pilN) [Vibrio vulnificus strain FORC_037]
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACACAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCTTGATCGCGGTCGGTATTCAGTGGGGTATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATTCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATTCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAGCGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAACTGATCCCAGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCAGGTATAAGCGATA
GTACCGCTCGACTCGCCACCATGTTGGATAATTTGGAACGTTCCTCCTTCCTGAAAGAAGTGGAAATGCATTCGATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTCTCTTTCGTGTTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(102-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

67.956

92.347

0.628
  pilN Vibrio cholerae strain A1552

63.277

90.306

0.571

Multiple sequence alignment