Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   FORC37_RS13935 Genome accession   NZ_CP016321
Coordinates   2840774..2841286 (-) Length   170 a.a.
NCBI ID   WP_038940290.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_037     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2835774..2846286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC37_RS13920 (FORC37_2516) aroB 2837132..2838223 (-) 1092 WP_088428126.1 3-dehydroquinate synthase -
  FORC37_RS13925 (FORC37_2517) aroK 2838256..2838774 (-) 519 WP_011079357.1 shikimate kinase AroK -
  FORC37_RS13930 (FORC37_2518) pilQ 2838976..2840760 (-) 1785 WP_017419660.1 type IV pilus secretin PilQ Machinery gene
  FORC37_RS13935 (FORC37_2519) pilP 2840774..2841286 (-) 513 WP_038940290.1 pilus assembly protein PilP Machinery gene
  FORC37_RS13940 (FORC37_2520) pilO 2841276..2841866 (-) 591 WP_011079354.1 type 4a pilus biogenesis protein PilO Machinery gene
  FORC37_RS13945 (FORC37_2521) pilN 2841859..2842449 (-) 591 WP_038940289.1 PilN domain-containing protein Machinery gene
  FORC37_RS13950 (FORC37_2522) pilM 2842439..2843446 (-) 1008 WP_017419656.1 type IV pilus assembly protein PilM Machinery gene
  FORC37_RS13955 (FORC37_2523) - 2843586..2846099 (+) 2514 WP_045629545.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19048.16 Da        Isoelectric Point: 10.2810

>NTDB_id=186895 FORC37_RS13935 WP_038940290.1 2840774..2841286(-) (pilP) [Vibrio vulnificus strain FORC_037]
MRSSLSLVAVLILLSGCRANTEPMEGFIRQVESEARQEMAKLQPEREYIPIDYLARENRRPFELPKEAVIASQPVVKKDC
WQPPSRAKNGKLERYPLSQLRLKGVMGSGNTIAGLVQTPQGKVEKVHPGQFIGQNNGKVTVVTPSYILINETLPDGLGCW
QQRKVRLALR

Nucleotide


Download         Length: 513 bp        

>NTDB_id=186895 FORC37_RS13935 WP_038940290.1 2840774..2841286(-) (pilP) [Vibrio vulnificus strain FORC_037]
ATGAGAAGTAGTTTATCGCTCGTCGCTGTGCTGATCTTGCTATCGGGTTGTCGAGCGAATACCGAACCGATGGAAGGTTT
TATCCGCCAAGTTGAATCGGAAGCGCGTCAAGAAATGGCCAAGTTACAACCAGAGCGTGAGTACATCCCGATTGATTACT
TAGCTCGAGAAAATCGCCGTCCTTTTGAGTTACCTAAGGAAGCCGTGATTGCCTCTCAACCTGTCGTTAAGAAAGACTGC
TGGCAGCCACCATCGCGGGCTAAAAATGGCAAGTTGGAGCGCTATCCACTTAGCCAATTACGTCTGAAAGGGGTGATGGG
GAGTGGCAATACCATTGCCGGTCTCGTACAGACCCCTCAAGGCAAAGTGGAGAAAGTACACCCAGGGCAATTTATCGGCC
AGAACAATGGCAAAGTGACCGTAGTAACGCCGTCTTACATATTGATCAATGAAACCCTTCCTGATGGTTTAGGTTGCTGG
CAGCAACGTAAAGTCAGACTGGCATTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(24-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

64.072

98.235

0.629
  pilP Vibrio cholerae strain A1552

59.375

94.118

0.559

Multiple sequence alignment