Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   B4V05_RS04905 Genome accession   NZ_CP020459
Coordinates   964926..965585 (-) Length   219 a.a.
NCBI ID   WP_011374681.1    Uniprot ID   Q38X00
Organism   Latilactobacillus sakei strain FAM18311     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 959926..970585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4V05_RS04890 (B4V05_04880) parE 961345..963336 (-) 1992 WP_016265130.1 DNA topoisomerase IV subunit B -
  B4V05_RS04895 (B4V05_04885) plsY 963538..964158 (+) 621 WP_011374679.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  B4V05_RS04900 (B4V05_04890) - 964181..964942 (-) 762 WP_011374680.1 ABC transporter permease -
  B4V05_RS04905 (B4V05_04895) comA 964926..965585 (-) 660 WP_011374681.1 ABC transporter ATP-binding protein Regulator
  B4V05_RS04910 (B4V05_04900) thiD 965754..966441 (+) 688 Protein_935 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  B4V05_RS04915 (B4V05_04905) budA 966617..967336 (-) 720 WP_076632500.1 acetolactate decarboxylase -
  B4V05_RS04920 (B4V05_04910) alsS 967370..969052 (-) 1683 WP_076632499.1 acetolactate synthase AlsS -
  B4V05_RS04925 (B4V05_04915) - 969177..970055 (-) 879 WP_011374685.1 aldose 1-epimerase family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24149.60 Da        Isoelectric Point: 5.0641

>NTDB_id=186848 B4V05_RS04905 WP_011374681.1 964926..965585(-) (comA) [Latilactobacillus sakei strain FAM18311]
MLQLETKGLNYSVDGQAILSDINITIEQGSYNTIVGPSGSGKSTLLRLLADLLTPTSGEILLAGQAISDYKPTQYRQRVS
YCFQQPTLFGTTVGDNLVFPFEIRELPVDETLVQTQLARVGLAEMPLTKKITTLSGGEKQRIALIRNLMFKPEILLLDEI
TTGLDEQTKSLVNGLITHLNQEDGITVLSITHDTQEQQRKGRQLQIVAGRLVHADESSR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=186848 B4V05_RS04905 WP_011374681.1 964926..965585(-) (comA) [Latilactobacillus sakei strain FAM18311]
ATGCTTCAGCTAGAGACAAAGGGCCTTAATTATAGCGTTGATGGCCAAGCAATATTGAGCGATATTAATATCACAATTGA
ACAAGGGTCTTATAATACGATTGTGGGACCATCAGGGAGTGGTAAGAGTACGTTGTTACGGCTATTAGCCGATTTATTGA
CACCAACGAGTGGGGAGATTTTGTTGGCAGGACAGGCCATTAGCGACTATAAACCGACGCAATATCGGCAACGCGTGTCT
TATTGCTTCCAACAACCAACGTTATTTGGGACGACAGTTGGTGATAATCTAGTATTTCCGTTTGAAATTCGCGAATTACC
AGTGGATGAGACGCTAGTTCAGACGCAATTAGCCCGAGTTGGGTTAGCGGAGATGCCCTTGACTAAAAAGATTACAACGC
TTTCGGGGGGCGAGAAGCAACGAATTGCTTTAATTCGTAACCTGATGTTTAAACCGGAAATCCTGCTACTGGATGAAATT
ACGACCGGCCTAGATGAGCAGACTAAATCCTTGGTTAATGGGCTAATCACACATTTGAATCAAGAAGATGGGATTACGGT
CTTGTCGATTACCCATGATACACAAGAACAACAACGGAAAGGGCGTCAGCTTCAAATTGTAGCTGGTCGTTTGGTACATG
CAGATGAATCTAGCCGTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38X00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

36.364

100

0.365
  comA Streptococcus pneumoniae Rx1

35.909

100

0.361
  comA Streptococcus pneumoniae D39

35.909

100

0.361
  comA Streptococcus pneumoniae R6

35.909

100

0.361
  comA Streptococcus mitis NCTC 12261

35.909

100

0.361