Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   A6J87_RS05960 Genome accession   NZ_CP020451
Coordinates   1159837..1160127 (+) Length   96 a.a.
NCBI ID   WP_080611745.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_259     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1154837..1165127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J87_RS05920 (A6J87_05895) - 1155416..1155850 (+) 435 WP_080611722.1 phage holin family protein -
  A6J87_RS05925 (A6J87_05900) - 1155843..1156073 (+) 231 WP_080611725.1 phage holin -
  A6J87_RS05930 (A6J87_05905) - 1156078..1156530 (+) 453 WP_080611727.1 hypothetical protein -
  A6J87_RS05935 (A6J87_05910) - 1156544..1156873 (+) 330 WP_080611728.1 hypothetical protein -
  A6J87_RS05940 (A6J87_05915) - 1156878..1157150 (+) 273 WP_080611730.1 hypothetical protein -
  A6J87_RS05945 (A6J87_05920) - 1157169..1158554 (+) 1386 WP_080611731.1 GH25 family lysozyme -
  A6J87_RS05950 (A6J87_05925) comGC 1159175..1159477 (+) 303 WP_080611741.1 competence type IV pilus major pilin ComGC Machinery gene
  A6J87_RS05955 (A6J87_05930) comGD 1159437..1159865 (+) 429 WP_263969676.1 competence type IV pilus minor pilin ComGD Machinery gene
  A6J87_RS05960 (A6J87_05935) comGE 1159837..1160127 (+) 291 WP_080611745.1 competence type IV pilus minor pilin ComGE Machinery gene
  A6J87_RS05965 (A6J87_05940) comGF 1160114..1160551 (+) 438 WP_080611747.1 competence type IV pilus minor pilin ComGF Machinery gene
  A6J87_RS05970 (A6J87_05945) comGG 1160529..1160846 (+) 318 WP_060973072.1 competence type IV pilus minor pilin ComGG Machinery gene
  A6J87_RS05975 (A6J87_05950) comGH 1160891..1161847 (+) 957 WP_080611749.1 class I SAM-dependent methyltransferase Machinery gene
  A6J87_RS05980 (A6J87_05955) - 1161904..1163097 (+) 1194 WP_073689934.1 acetate kinase -
  A6J87_RS05985 (A6J87_05960) - 1163348..1163545 (+) 198 WP_013991261.1 helix-turn-helix transcriptional regulator -
  A6J87_RS05990 (A6J87_05965) - 1163557..1164213 (+) 657 WP_064523497.1 CPBP family intramembrane glutamic endopeptidase -
  A6J87_RS05995 (A6J87_05970) - 1164291..1164737 (+) 447 WP_013991259.1 hypothetical protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10699.67 Da        Isoelectric Point: 11.0796

>NTDB_id=186758 A6J87_RS05960 WP_080611745.1 1159837..1160127(+) (comGE) [Streptococcus salivarius strain FDAARGOS_259]
MVNIKRRSLRGYILVESLVAMAVLVLVSGLILDQINTNRRLMARNLHQQEVLSVATMAVQTKQDQLTLNGITVTVKRSKQ
GIAVYESGKEIIHVSK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=186758 A6J87_RS05960 WP_080611745.1 1159837..1160127(+) (comGE) [Streptococcus salivarius strain FDAARGOS_259]
GTGGTAAATATAAAAAGACGGTCTCTTAGAGGCTATATTCTTGTCGAAAGCCTGGTAGCAATGGCTGTCTTAGTGCTTGT
CAGTGGTCTTATATTAGATCAAATCAATACCAATCGTAGGTTAATGGCTAGGAATCTCCACCAACAGGAGGTTTTGAGTG
TGGCAACCATGGCAGTTCAGACCAAACAGGATCAGTTGACCTTAAATGGTATCACAGTGACAGTAAAACGTAGCAAGCAA
GGTATCGCGGTTTATGAATCAGGAAAGGAGATTATTCATGTCTCTAAATAG

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

42.708

100

0.427
  comGE Streptococcus mutans UA159

42.708

100

0.427