Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VSVS12_RS05265 Genome accession   NZ_CP016307
Coordinates   1113393..1114739 (+) Length   448 a.a.
NCBI ID   WP_418380861.1    Uniprot ID   -
Organism   Vibrio scophthalmi strain VS-12     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1108393..1119739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSVS12_RS05250 (VSVS12_01058) - 1108944..1110257 (+) 1314 WP_005593857.1 anaerobic C4-dicarboxylate transporter family protein -
  VSVS12_RS05260 (VSVS12_01060) uvrB 1111055..1113085 (+) 2031 WP_005593858.1 excinuclease ABC subunit UvrB -
  VSVS12_RS05265 (VSVS12_01061) luxO 1113393..1114739 (+) 1347 WP_418380861.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VSVS12_RS05270 (VSVS12_01062) luxU 1114760..1115098 (+) 339 WP_065431071.1 quorum-sensing phosphorelay protein LuxU -
  VSVS12_RS05275 (VSVS12_01063) - 1115084..1115971 (-) 888 WP_065430002.1 YvcK family protein -
  VSVS12_RS05280 (VSVS12_01064) moaA 1116290..1117279 (+) 990 WP_065430003.1 GTP 3',8-cyclase MoaA -
  VSVS12_RS05285 (VSVS12_01065) moaB 1117370..1117882 (+) 513 WP_005593866.1 molybdenum cofactor biosynthesis protein B -
  VSVS12_RS05290 (VSVS12_01066) moaC 1117907..1118386 (+) 480 WP_005593869.1 cyclic pyranopterin monophosphate synthase MoaC -
  VSVS12_RS05295 (VSVS12_01067) moaD 1118383..1118628 (+) 246 WP_065430004.1 molybdopterin synthase sulfur carrier subunit -
  VSVS12_RS05300 (VSVS12_01068) moaE 1118630..1119085 (+) 456 WP_005593872.1 molybdopterin synthase catalytic subunit MoaE -
  VSVS12_RS05305 (VSVS12_01069) - 1119293..1119709 (+) 417 WP_009387864.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49760.82 Da        Isoelectric Point: 5.1536

>NTDB_id=186757 VSVS12_RS05265 WP_418380861.1 1113393..1114739(+) (luxO) [Vibrio scophthalmi strain VS-12]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLEFRTPDLILLDLRLPDMTGMDVLQAVKQQNPDVPVIFMTAHGSI
DTAVEAMRLGAQDFLIKPCEADRLRVTVNNAIRKASKLRTEAGTNQGYQGFIGSSHTMQAVYRTIDSAATSKASIFITGE
SGTGKEVCAEALHATSNRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDREGAAELADGGTLFLDELCEMDLDLQ
TKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVIEIAYSLLGFM
SKEEGKDFIRLSPEVVDRFARYEWPGNVRQLQNVLRNVVVLNNGREIRLDMLPPPLNQPCEGVSRSINEETETLSVHDIF
PLWLTEKNAIKQAIKACEGNIPKAAGYLDVSPSTLYRKLQGWNEKETK

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=186757 VSVS12_RS05265 WP_418380861.1 1113393..1114739(+) (luxO) [Vibrio scophthalmi strain VS-12]
ATGGTAGAAGATACCGCCTCTGTTGCGGCACTCTATCGTTCCTATCTTACGCCACTGGGTATCGATATTAATATCGTCGG
TACCGGGCGCGATGCGATTGAAAGTCTTGAATTTCGCACTCCCGATTTAATCTTGCTCGATTTGCGCTTGCCCGATATGA
CAGGGATGGATGTTCTACAAGCAGTCAAACAGCAAAATCCGGATGTGCCAGTTATTTTCATGACTGCTCATGGTTCGATC
GATACCGCGGTTGAGGCGATGCGGTTAGGCGCACAAGACTTTTTGATCAAGCCCTGTGAAGCGGACCGACTGCGCGTTAC
GGTGAACAATGCCATTCGCAAAGCAAGCAAGCTAAGAACCGAAGCGGGAACCAACCAAGGCTATCAAGGGTTTATCGGCA
GTAGTCATACCATGCAAGCGGTCTATCGCACGATTGACTCGGCGGCGACCAGTAAAGCGAGTATTTTCATTACTGGTGAA
AGTGGTACCGGTAAAGAGGTGTGTGCAGAGGCATTGCATGCCACCAGTAATCGTGGCGATAAACCATTTATTGCCATCAA
CTGTGCAGCCATTCCTAAAGATTTGATTGAAAGTGAATTGTTTGGTCACGTTAAAGGGGCCTTTACTGGCGCGGCAACTG
ATCGTGAAGGCGCTGCGGAACTGGCCGATGGCGGAACCCTGTTTTTGGATGAATTATGCGAAATGGATTTGGACTTGCAG
ACCAAATTATTGCGTTTTATCCAAACCGGAACCTTCCAAAAGGTGGGTTCATCAAAAATGAAAAGTGTGGATGTACGTTT
TGTTTGTGCAACCAACCGAGACCCATGGAAAGAAGTACAGGAAGGCCGCTTTCGTGAAGACTTGTATTATCGCCTTTACG
TTATCCCATTGCACTTACCACCTTTGCGTGAGCGTGGCGAAGATGTCATTGAAATTGCATACTCCTTGTTAGGCTTTATG
TCGAAAGAAGAAGGCAAAGATTTTATCCGTCTCTCGCCGGAAGTGGTTGATCGCTTTGCTCGTTATGAATGGCCCGGTAA
TGTGCGTCAACTGCAAAACGTACTGAGAAATGTAGTGGTGCTTAACAATGGCCGTGAAATCCGCTTAGACATGTTACCAC
CACCGTTGAACCAACCTTGTGAGGGCGTGTCACGCAGCATCAATGAAGAAACAGAGACCTTGTCGGTACACGATATTTTC
CCGTTATGGCTGACGGAAAAAAATGCCATCAAGCAGGCGATAAAAGCGTGTGAGGGAAATATTCCTAAAGCGGCCGGTTA
TCTCGATGTTAGCCCATCGACACTATACCGTAAGCTACAAGGTTGGAATGAAAAAGAGACCAAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(2-108)

Sigma-54 interaction domain (Sigma54_activat)

(132-297)

Bacterial regulatory protein, Fis family (HTH_8)

(402-440)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.067

99.33

0.855
  pilR Pseudomonas aeruginosa PAK

37.783

98.661

0.373

Multiple sequence alignment