Detailed information NTG0186756

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: VSVS12_RS03540
• Genome accession: NZ_CP016307
• Coordinates: 759485..762868 (-)
• Length: 1127 a.a.
• NCBI ID: WP_065429829.1
• Uniprot ID: -
• Organism: Vibrio scophthalmi strain VS-12
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 754485..767868

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VSVS12_RS03525 (VSVS12_00707)	-	754973..755998 (-)	1026	WP_005593235.1	ABC transporter permease	-
VSVS12_RS03530 (VSVS12_00708)	-	756001..756987 (-)	987	WP_005593236.1	ABC transporter permease	-
VSVS12_RS03535 (VSVS12_00709)	-	757160..758842 (-)	1683	WP_005593237.1	ABC transporter substrate-binding protein	-
VSVS12_RS03540 (VSVS12_00710)	chiS	759485..762868 (-)	3384	WP_065429829.1	response regulator	Regulator
VSVS12_RS03545 (VSVS12_00711)	rsmC	763062..764084 (-)	1023	WP_005593239.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
VSVS12_RS03550 (VSVS12_00712)	-	764181..765266 (-)	1086	WP_065429830.1	AI-2E family transporter	-
VSVS12_RS03555 (VSVS12_00713)	-	765388..765558 (+)	171	WP_197498394.1	hypothetical protein	-
VSVS12_RS03560 (VSVS12_00714)	hemL	765599..766891 (-)	1293	WP_005593243.1	glutamate-1-semialdehyde 2,1-aminomutase	-
VSVS12_RS03565 (VSVS12_00715)	erpA	767177..767518 (+)	342	WP_005593244.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1127 a.a.
• Molecular weight: 127493.64 Da
• Isoelectric Point: 5.5831

>NTDB_id=186756 VSVS12_RS03540 WP_065429829.1 759485..762868(-) (chiS) [Vibrio scophthalmi strain VS-12]
MFKLYRKQRFKRLQNTLMLAFLALSITPLTVIALFFLNSHSQDLQEQSTSHLLSVRDSKHQQIVDYLDARESEVMGFVRS
ELAYASGGRFYGLVNAFQSLGLDINQARDYAQQRYIQGSGNQIKTSILPQSDIYNGTERYRLLHTRYHRAYLELLKRSDF
DDILLVDINGNVTYSIYKHDNFGTNLISGKYKDDNLGLAFQKLKKNVTSVRKTNEDYTPVFFSDFETHHGKSYAWIGAPI
IQQGYLHSYAMFRLPNNSLTKLMADNNNIWSIKTLLVGEDHKPRTLAYSQEEVDNSLTIIDRAFNNPASVGTFTNALGEE
IIAAYSHIQTKGIDWALVVEVAEKEAFARVQQLERLFVFAMLFAIIVVVIASHYLSNFITLPLLKLTWSAEKASAGDLNA
EINTQRKDEIGRLAIAFDRMQRSIRDKIQLIREQNEELEDNLTIIQKKNDELQLANKLKDEFLATTSHELRTPLHGMIGI
AEALISGASGPITADHKYQLDIIISSGQRLTTLVDDLLDYHKMRYGNLDIETCGVDLSSATRLVLELSSHLLGNKQIRII
NQVAAEPVWVAADPQRLEQVLYNLVGNAIKYTREGKIVISATVVDDKIRVQVVDTGQGIPADQIEHIFEPLIQASDDASR
YRQGAGLGLSISRQLVELMDGSLYVSSQPMVGTTFSFTLPIATEAQIAQASHNDSIHFKVPESYELEETSISSLPENPDG
QLLLVVDDEPVNLRVLDSFLRIAGYRVRTAKDGFEALQQIEQERPELVLLDVMMPGLSGYQVCETIRENYSQSELPVIML
TALNQPDDRIRGFNSGANDYLSKPFNKQELAARILVHLSASQAELRKAENHRLQQELKQRAAVEASLLETQGRLLEQLES
APEAIICIRDDGRIRFANEAAARLFKRSTEQLKRSNADEILGPKFLDVEQEHYCGKVDIYVEDTRQHLDADILRLPLESG
LKSMYIFDNGGGANAVRIHNLETAIEALSSYAFDGDKGKLQELKELGGEFTRLADRVTGEHKSKQEVMREVLVDAMTTAI
NYWENSSGQTKFAFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLSSLEYILDNSHEMNAERALIEELRDK
LQHLLTS

Nucleotide

• Length: 3384 bp

>NTDB_id=186756 VSVS12_RS03540 WP_065429829.1 759485..762868(-) (chiS) [Vibrio scophthalmi strain VS-12]
ATGTTTAAGTTGTATCGAAAACAAAGATTCAAACGCCTGCAAAATACACTCATGCTGGCATTTTTGGCGCTCAGTATCAC
GCCTCTAACTGTGATCGCCCTCTTCTTCCTCAATTCGCACAGCCAAGATCTGCAAGAGCAAAGCACTTCACATCTTCTCT
CTGTGCGAGATAGTAAGCATCAACAGATTGTTGATTATCTTGATGCACGCGAATCGGAAGTGATGGGGTTTGTCCGTTCA
GAGCTCGCTTACGCCAGTGGCGGCCGCTTCTATGGCTTAGTCAATGCGTTCCAAAGCCTCGGTTTGGACATCAACCAGGC
TCGCGACTATGCGCAGCAACGCTATATTCAAGGCTCAGGGAATCAGATTAAAACGTCAATTTTGCCGCAATCGGACATTT
ATAACGGTACAGAGCGCTATCGCTTACTACATACTCGTTATCATCGCGCCTATTTAGAACTGTTAAAACGTTCTGATTTT
GACGACATTTTGTTGGTCGATATTAACGGCAACGTCACCTATTCCATCTATAAACACGATAACTTCGGTACCAACCTAAT
CTCAGGTAAATACAAAGACGATAACTTAGGTTTGGCCTTTCAAAAACTGAAGAAAAATGTCACGTCGGTACGTAAGACCA
ATGAAGACTACACGCCAGTGTTCTTCTCTGACTTCGAAACTCATCATGGAAAATCTTACGCTTGGATCGGTGCGCCAATC
ATCCAACAAGGCTACCTGCATAGCTACGCGATGTTCCGTCTACCAAATAATAGTTTGACCAAATTGATGGCTGACAATAA
CAACATTTGGTCGATAAAAACCTTACTGGTTGGTGAAGACCACAAACCACGTACCCTTGCTTATAGCCAAGAAGAGGTTG
ATAACAGCCTGACTATTATCGATCGTGCCTTTAACAATCCAGCGTCAGTAGGCACCTTTACCAATGCTCTCGGTGAAGAG
ATCATTGCTGCCTACAGCCATATCCAAACCAAAGGTATTGACTGGGCACTTGTGGTGGAAGTCGCTGAAAAAGAGGCCTT
TGCGCGTGTACAACAGCTTGAGCGATTGTTTGTTTTTGCCATGCTGTTTGCCATTATCGTGGTGGTCATCGCTTCGCACT
ACCTCTCCAACTTCATCACGCTACCATTATTGAAATTAACATGGTCAGCAGAAAAAGCCTCCGCCGGTGATCTCAATGCT
GAAATCAATACTCAGCGTAAAGATGAGATTGGCCGACTCGCCATTGCATTTGATCGCATGCAGCGTTCTATTCGTGACAA
AATCCAGCTTATTCGCGAACAAAATGAAGAGCTGGAAGATAACCTCACGATAATCCAAAAGAAAAACGATGAATTGCAGC
TGGCCAACAAACTTAAAGATGAGTTTCTTGCCACCACTTCACACGAATTACGCACCCCACTGCATGGCATGATTGGTATT
GCTGAAGCGCTTATTTCAGGGGCTAGTGGCCCGATTACTGCCGATCATAAATATCAACTCGATATTATCATTAGCAGCGG
ACAACGCTTAACCACCTTAGTTGACGATCTACTCGACTATCACAAAATGCGTTATGGCAATCTTGACATCGAAACCTGTG
GTGTCGACTTATCGAGTGCCACTCGCCTTGTGCTAGAGCTCTCGTCACACCTACTGGGTAACAAACAGATCCGCATTATT
AACCAAGTGGCGGCTGAGCCAGTTTGGGTTGCGGCGGATCCACAACGTCTTGAACAGGTGCTTTATAATCTCGTTGGTAA
CGCGATCAAATACACCCGAGAAGGTAAAATTGTTATTTCTGCCACGGTAGTAGACGATAAAATCCGCGTGCAAGTGGTTG
ATACTGGCCAAGGCATTCCTGCCGACCAAATCGAGCATATTTTTGAACCATTAATCCAAGCCAGCGATGATGCCAGCCGC
TACCGTCAGGGGGCTGGCCTTGGTCTGTCTATTAGCCGCCAGTTAGTTGAATTGATGGATGGCTCACTCTATGTCAGCAG
CCAACCAATGGTCGGCACAACATTTAGCTTTACCTTACCGATCGCCACCGAGGCGCAAATCGCGCAAGCGAGCCATAACG
ATAGCATCCACTTTAAAGTGCCTGAGAGCTATGAACTTGAAGAAACGAGCATCAGTAGCCTACCTGAGAACCCTGATGGC
CAATTGCTGCTTGTTGTGGATGATGAACCGGTAAACTTAAGAGTATTGGACAGTTTCTTAAGAATCGCGGGCTATCGTGT
ACGCACGGCGAAAGATGGGTTTGAAGCCTTACAACAAATTGAACAAGAAAGACCGGAACTGGTGCTACTGGATGTGATGA
TGCCGGGCTTAAGTGGCTATCAAGTCTGTGAAACCATTCGTGAAAATTACAGCCAGTCAGAATTGCCTGTCATTATGTTA
ACTGCCTTAAACCAGCCTGATGACCGTATTCGTGGCTTCAATTCCGGCGCCAATGACTACTTATCAAAACCATTCAATAA
ACAAGAGCTGGCGGCCCGTATTTTAGTGCACCTCTCAGCAAGCCAAGCTGAATTGCGTAAAGCGGAAAACCACCGTTTAC
AGCAGGAATTAAAACAACGCGCCGCCGTGGAAGCGAGCTTGCTCGAAACACAAGGTCGATTGTTAGAACAACTTGAATCT
GCTCCAGAAGCGATAATCTGTATCCGGGACGATGGTCGAATCCGCTTTGCTAACGAAGCGGCAGCACGACTGTTTAAACG
CAGCACCGAACAGCTAAAACGTTCAAATGCAGACGAAATTTTAGGCCCTAAGTTCCTTGATGTTGAGCAAGAGCACTATT
GCGGTAAGGTTGATATCTACGTTGAGGATACCCGCCAACATCTCGATGCCGACATTCTTCGTCTGCCACTGGAATCAGGC
CTTAAGTCAATGTACATCTTTGACAATGGTGGCGGTGCCAATGCGGTACGTATTCACAACCTAGAGACCGCCATAGAGGC
ACTTTCCAGCTATGCGTTTGACGGTGACAAAGGCAAGCTACAAGAGCTCAAAGAATTAGGCGGTGAATTTACTCGTCTTG
CTGACCGCGTCACGGGCGAACATAAGTCGAAACAGGAAGTGATGCGCGAAGTATTGGTGGATGCAATGACAACCGCAATC
AATTACTGGGAAAACAGTTCAGGCCAAACCAAGTTTGCCTTTGCTGAGCAAAGTGGTTTATGGCGCGTCTATCTAGACCG
CAGCACTCTGCAAACGCGTACCTTAGATAAATACCTACGTATCGAAACGCTACCGAAAACACCACGTTGGCGTACCGTGC
TGAGTTCACTGGAATATATTCTTGATAACAGCCACGAGATGAATGCCGAACGAGCACTGATTGAAGAGCTACGAGATAAG
CTTCAACACCTACTGACCAGTTAG

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-426)

• Response regulator receiver domain (Response_reg) (724-834)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (573-681)

• PAS domain (PAS_8) (878-925)

• His Kinase A (phospho-acceptor) domain (HisKA) (459-524)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	74.202	100	0.743