Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KC8_RS12355 Genome accession   NZ_CP016306
Coordinates   2618631..2619203 (-) Length   190 a.a.
NCBI ID   WP_029624217.1    Uniprot ID   A0A1X9YGY8
Organism   Sphingomonas sp. KC8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2613631..2624203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KC8_RS12335 (KC8_12485) - 2613965..2614387 (-) 423 WP_010123155.1 SUF system Fe-S cluster assembly regulator -
  KC8_RS12340 (KC8_12490) - 2614467..2615369 (-) 903 WP_010123154.1 helix-turn-helix domain-containing protein -
  KC8_RS12345 (KC8_12495) - 2615552..2617384 (-) 1833 WP_010123153.1 DUF885 domain-containing protein -
  KC8_RS12350 (KC8_12500) - 2617512..2618546 (+) 1035 WP_010123152.1 quinone-dependent dihydroorotate dehydrogenase -
  KC8_RS12355 (KC8_12505) ssb 2618631..2619203 (-) 573 WP_029624217.1 single-stranded DNA-binding protein Machinery gene
  KC8_RS12360 (KC8_12510) - 2619324..2622545 (-) 3222 WP_010123150.1 autotransporter outer membrane beta-barrel domain-containing protein -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 19371.94 Da        Isoelectric Point: 5.3027

>NTDB_id=186740 KC8_RS12355 WP_029624217.1 2618631..2619203(-) (ssb) [Sphingomonas sp. KC8]
MAGSVNKVILVGNLGRDPESRSFQNGGKVVNLRIATSETWKDRATGERREKTEWHSVAIFNEGLARTAEQYLRKGSKVYI
EGQLQTRKWQDQSGADKYSTEIVLQGFNSQLVMLDGPGGGSGGGGRGGSGAGGSSGWDEGDSGFGGSGSSGMSSGGGFGG
GGGGGRSGGTGGGARPSNPFDSDLDDDVPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=186740 KC8_RS12355 WP_029624217.1 2618631..2619203(-) (ssb) [Sphingomonas sp. KC8]
ATGGCAGGCAGCGTGAACAAGGTGATCCTCGTCGGCAATCTGGGCCGCGATCCCGAATCGCGCAGCTTCCAGAATGGCGG
CAAGGTGGTGAATCTGCGCATCGCCACATCCGAAACCTGGAAGGATCGCGCCACCGGCGAACGCCGTGAAAAGACCGAAT
GGCATTCGGTGGCGATCTTCAACGAAGGTCTGGCGCGTACGGCCGAACAATATCTGCGCAAGGGCAGCAAGGTCTATATC
GAAGGCCAGCTTCAGACGCGCAAATGGCAGGATCAGTCGGGCGCAGACAAATATTCCACCGAAATCGTGCTGCAGGGCTT
CAACAGCCAGCTGGTGATGCTGGATGGGCCGGGTGGCGGCTCGGGCGGCGGCGGCCGTGGCGGTTCAGGCGCGGGCGGCA
GCAGCGGCTGGGACGAAGGTGATTCCGGTTTTGGCGGTTCGGGTTCGTCGGGCATGAGCAGCGGCGGCGGTTTCGGCGGC
GGTGGCGGCGGTGGCCGCTCGGGTGGCACCGGTGGCGGTGCGCGTCCATCCAATCCGTTCGACAGCGATCTCGACGACGA
CGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X9YGY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.668

100

0.484
  ssb Vibrio cholerae strain A1552

47.34

98.947

0.468
  ssb Neisseria gonorrhoeae MS11

37.306

100

0.379

Multiple sequence alignment