Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   A6J85_RS01635 Genome accession   NZ_CP020450
Coordinates   317278..319293 (-) Length   671 a.a.
NCBI ID   WP_082307184.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 312278..324293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS01615 (A6J85_01610) - 312516..313730 (-) 1215 WP_008808439.1 pyridoxal phosphate-dependent aminotransferase -
  A6J85_RS01620 (A6J85_01615) - 314120..314572 (+) 453 WP_011999938.1 universal stress protein -
  A6J85_RS01625 (A6J85_01620) - 314609..316000 (-) 1392 WP_082307182.1 Cof-type HAD-IIB family hydrolase -
  A6J85_RS01630 (A6J85_01625) - 316064..317026 (+) 963 WP_082307183.1 asparaginase -
  A6J85_RS01635 (A6J85_01630) recG/mmsA 317278..319293 (-) 2016 WP_082307184.1 ATP-dependent DNA helicase RecG Machinery gene
  A6J85_RS01640 (A6J85_01635) alr 319365..320471 (-) 1107 WP_082307185.1 alanine racemase -
  A6J85_RS01645 (A6J85_01640) acpS 320461..320823 (-) 363 WP_045506039.1 holo-ACP synthase -
  A6J85_RS01650 (A6J85_01645) - 320939..321970 (-) 1032 WP_082307186.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75481.20 Da        Isoelectric Point: 5.6038

>NTDB_id=186599 A6J85_RS01635 WP_082307184.1 317278..319293(-) (recG/mmsA) [Streptococcus gordonii strain FDAARGOS_257]
MNLHQPLSVLPGVGPKSAEKFAKLGIETLQDLLLYFPFRYEDFQSKQVLDLEDGEKAVISGIVATPANVQYYGFKRNRLR
FSIKQGEVILAVNFFNQPYLADKVEVGANIAVFGKWDKAKASLTGMKLLAQVEDDLQPVYRVAQGISQTSLIKLIKTAFD
QGLDLLIEENLPQVLLERYQLLSRAEAVRAMHFPKDLAEYKQALRRVKFEELFYFQMQLQVLKMETKDVSNGLALAWQEE
QLQEKKSQLPFPLTGAQERALAEILSDLKSPAHMNRLLQGDVGSGKTVVAGLAMYAVYTAGYQSALMVPTEILAEQHFES
LSQLFPDLKLALLTGSMKTAERKETLLAIELGQVDMVIGTHALIQDGVQYHRLGLVIVDEQHRFGVAQRRILREKGDNPD
VLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWIKKELVKGAQVYFISPLIEESEALDLKN
AIDLEEELQAYFGGDARVSLLHGKMKSDEKEAIMQAFKNKEVDILVSTTVIEVGVNVPNATIMVIMDADRFGLSQLHQLR
GRVGRGDKQSYAVLVANPKTESGKKRMKIMTETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK
VASQIVQNKEWRRDPNWHLVALHLDKQDYLD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=186599 A6J85_RS01635 WP_082307184.1 317278..319293(-) (recG/mmsA) [Streptococcus gordonii strain FDAARGOS_257]
ATGAATTTACACCAACCCTTATCGGTTCTGCCGGGAGTAGGACCGAAATCAGCAGAAAAGTTTGCAAAGCTTGGTATTGA
GACCTTACAGGATTTACTACTGTATTTTCCTTTTCGCTATGAAGATTTTCAAAGCAAGCAGGTGCTTGATCTAGAGGATG
GAGAAAAGGCCGTCATTTCTGGTATAGTTGCGACACCAGCAAATGTTCAGTATTACGGGTTTAAACGCAACCGTCTCCGT
TTTTCAATCAAGCAAGGGGAAGTCATCCTAGCTGTCAATTTCTTTAACCAGCCTTATTTGGCGGATAAGGTTGAAGTGGG
GGCAAATATTGCTGTTTTTGGAAAGTGGGATAAGGCTAAAGCTAGCTTGACTGGGATGAAGCTCTTGGCTCAGGTCGAAG
ACGACTTGCAGCCAGTTTATAGGGTGGCTCAAGGGATTAGCCAGACAAGTCTGATTAAATTAATTAAAACAGCTTTTGAC
CAAGGCTTGGATTTACTGATTGAAGAAAATTTACCCCAGGTCTTGTTGGAACGCTACCAATTGCTATCTCGAGCAGAAGC
AGTGAGGGCCATGCATTTTCCAAAAGATTTGGCAGAATACAAACAGGCGCTACGTCGTGTCAAATTCGAAGAATTGTTCT
ATTTCCAAATGCAACTTCAGGTGCTTAAAATGGAAACAAAGGATGTCAGCAATGGTCTGGCCCTTGCTTGGCAGGAAGAG
CAGCTACAAGAGAAAAAAAGTCAGCTACCTTTTCCTCTGACAGGAGCTCAGGAGAGGGCTTTGGCTGAAATTTTGTCTGA
TTTGAAGTCGCCTGCTCACATGAACCGACTCTTACAGGGAGATGTTGGAAGTGGGAAGACAGTAGTGGCTGGTTTGGCCA
TGTATGCTGTCTATACAGCTGGCTACCAATCGGCTTTGATGGTGCCTACTGAAATTTTGGCAGAGCAGCATTTTGAAAGC
CTCAGTCAGCTCTTTCCTGATTTAAAACTAGCTTTATTAACTGGAAGTATGAAAACAGCTGAGCGTAAAGAGACTTTGCT
GGCTATAGAGCTTGGTCAGGTTGATATGGTAATTGGGACCCATGCTTTGATCCAAGATGGAGTTCAATACCATCGCCTAG
GACTGGTTATCGTAGATGAACAGCATCGCTTTGGGGTTGCTCAACGTAGAATTTTGCGGGAAAAAGGAGATAATCCGGAT
GTTCTCATGATGACTGCTACCCCCATTCCCAGAACTTTGGCCATTACGGCTTTTGGGGATATGGATGTGTCCATTATTGA
TCAAATGCCAGCGGGACGAAAGCCCATTATTACCCGTTGGGTCAAGCATGAGCAACTCGAGGTCGTGCTTGATTGGATAA
AAAAAGAATTAGTAAAGGGTGCTCAGGTTTACTTTATTTCTCCTTTGATTGAGGAATCAGAAGCTCTGGATCTAAAAAAT
GCTATTGACTTAGAGGAAGAATTGCAAGCTTACTTTGGGGGAGATGCCCGAGTTTCTCTCCTTCATGGTAAGATGAAGAG
TGACGAAAAAGAGGCTATTATGCAGGCCTTCAAGAATAAAGAGGTAGATATTTTAGTGTCTACAACTGTCATTGAAGTGG
GTGTTAATGTGCCCAATGCAACGATTATGGTTATCATGGATGCTGATCGTTTTGGGCTCAGTCAGCTGCATCAGTTGCGC
GGGCGTGTGGGGCGTGGTGATAAGCAATCCTATGCCGTTCTTGTCGCAAATCCAAAAACAGAATCCGGTAAGAAACGTAT
GAAAATCATGACGGAAACGACAGATGGCTTTGTACTTGCTGAAGAAGATTTAAAAATGCGTGGTTCAGGAGAGATTTTTG
GAACCCGTCAGTCCGGTATTCCTGAATTTCAAGTGGCTGATATCGTAGAGGACTACCCTATCTTGGAAGAAGCGAGAAAG
GTAGCTAGCCAAATTGTGCAGAATAAAGAATGGAGGAGGGATCCTAACTGGCATCTAGTGGCTCTTCATTTAGATAAACA
AGATTATTTGGATTAA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-662)

Helicase conserved C-terminal domain (Helicase_C)

(451-566)

RecG wedge domain (RecG_wedge)

(12-157)

DEAD/DEAH box helicase (DEAD)

(256-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

79.136

100

0.791
  recG/mmsA Streptococcus pneumoniae R36A

79.136

100

0.791
  recG Bacillus subtilis subsp. subtilis str. 168

49.263

100

0.498
  recG Neisseria meningitidis strain C311

40.091

97.765

0.392