Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   A6J82_RS00845 Genome accession   NZ_CP020449
Coordinates   142268..142639 (-) Length   123 a.a.
NCBI ID   WP_000601101.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain FDAARGOS_254     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 137268..147639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J82_RS00815 (A6J82_00825) proC 137864..138634 (+) 771 WP_001881026.1 pyrroline-5-carboxylate reductase -
  A6J82_RS00820 (A6J82_00830) - 138655..139320 (-) 666 WP_000008108.1 CPBP family intramembrane glutamic endopeptidase -
  A6J82_RS00825 (A6J82_00835) - 139389..139655 (-) 267 Protein_137 hypothetical protein -
  A6J82_RS00830 (A6J82_00840) - 139634..139826 (-) 193 Protein_138 helix-turn-helix transcriptional regulator -
  A6J82_RS00835 (A6J82_00845) - 139954..141147 (-) 1194 WP_000047534.1 acetate kinase -
  A6J82_RS00840 (A6J82_00850) comGH 141179..142153 (-) 975 WP_001008569.1 class I SAM-dependent methyltransferase Machinery gene
  A6J82_RS00845 (A6J82_00855) comGG 142268..142639 (-) 372 WP_000601101.1 competence type IV pilus minor pilin ComGG Machinery gene
  A6J82_RS00850 (A6J82_00860) comGF 142617..143072 (-) 456 WP_000793378.1 competence type IV pilus minor pilin ComGF Machinery gene
  A6J82_RS00855 (A6J82_00865) comGB 143069..144112 (-) 1044 WP_223297804.1 competence type IV pilus assembly protein ComGB Machinery gene
  A6J82_RS00860 (A6J82_00870) comGA 144006..144977 (-) 972 WP_000250798.1 competence type IV pilus ATPase ComGA Machinery gene
  A6J82_RS00865 (A6J82_00880) - 145142..146554 (+) 1413 WP_017771557.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13891.14 Da        Isoelectric Point: 10.0693

>NTDB_id=186485 A6J82_RS00845 WP_000601101.1 142268..142639(-) (comGG) [Streptococcus agalactiae strain FDAARGOS_254]
MILKKKLKAGILLQAIVLAAVFTLVLQFYLARILATERQYHSQIEASKAYLTAQLAYKTIEGDSISGKCYFIGGYASYLQ
EGNYLQVKVTLDKGGNYNHKFYRKTDTLQVPLKSNDNKASHKH

Nucleotide


Download         Length: 372 bp        

>NTDB_id=186485 A6J82_RS00845 WP_000601101.1 142268..142639(-) (comGG) [Streptococcus agalactiae strain FDAARGOS_254]
ATGATTTTAAAGAAGAAACTTAAAGCTGGCATCCTTTTGCAAGCTATTGTATTGGCTGCTGTATTTACACTCGTCTTACA
GTTTTATCTAGCAAGAATATTGGCAACAGAAAGACAGTATCATAGCCAAATTGAAGCAAGTAAAGCTTATTTAACAGCGC
AGTTAGCTTATAAAACAATAGAAGGTGACTCCATATCAGGAAAATGTTATTTTATAGGAGGATATGCTTCATACCTCCAA
GAAGGGAACTATTTACAAGTTAAGGTTACATTGGATAAGGGAGGAAACTATAACCATAAGTTTTATCGTAAAACAGACAC
TCTCCAAGTACCTCTCAAGTCTAATGATAATAAAGCAAGCCATAAACATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

44.554

82.114

0.366
  comGG Streptococcus mutans UA159

44.554

82.114

0.366