Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   A6J72_RS07715 Genome accession   NZ_CP020433
Coordinates   1541552..1543567 (+) Length   671 a.a.
NCBI ID   WP_082312147.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1536552..1548567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS07700 (A6J72_07690) - 1538908..1539948 (+) 1041 WP_003074442.1 3-deoxy-7-phosphoheptulonate synthase -
  A6J72_RS07705 (A6J72_07695) acpS 1539990..1540355 (+) 366 WP_221762886.1 holo-ACP synthase -
  A6J72_RS07710 (A6J72_07700) alr 1540342..1541448 (+) 1107 WP_082312146.1 alanine racemase -
  A6J72_RS07715 (A6J72_07705) recG/mmsA 1541552..1543567 (+) 2016 WP_082312147.1 ATP-dependent DNA helicase RecG Machinery gene
  A6J72_RS07720 (A6J72_07710) - 1544056..1545018 (-) 963 WP_082312148.1 asparaginase -
  A6J72_RS07725 (A6J72_07715) - 1545083..1546471 (+) 1389 WP_082312149.1 Cof-type HAD-IIB family hydrolase -
  A6J72_RS07730 (A6J72_07720) - 1546517..1546969 (-) 453 WP_003028799.1 universal stress protein -
  A6J72_RS07735 (A6J72_07725) - 1547122..1548336 (+) 1215 WP_003074453.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75251.31 Da        Isoelectric Point: 6.5810

>NTDB_id=186458 A6J72_RS07715 WP_082312147.1 1541552..1543567(+) (recG/mmsA) [Streptococcus intermedius strain FDAARGOS_233]
MNLHQPLTVLPGVGPKSAEKLSKLGIENLQDLLLYFPFRYEDFKSKNVLELEDGEKAVVSGVVVTPANVQYYGYKRNRLR
FTIKQGEVVLAVNFFNQPYLADKVALGSTIAIFGKWDKAKAGLTGMKILAQVEDDLQPVYRVAQGISQTSLVKTIKIAFD
QGLDLLLEENIPQILLGHYQLLGRSQAVRAMHFPKDLAEYKQALRRIKFEELFYFEMQLQVLKSESKNASQGLAILWRDD
LLEKKLSLLPFELTDAQKQSLDDILQDMQAPIHMNRLLQGDVGSGKTVVACLAMYAAYSAGVQSALMVPTEILAEQHFAS
LTQLFPELRIILLTGGMKLVERKQALDAIKTGQVDMIVGTHALIQEGVSYHRLGLVIIDEQHRFGVEQRRVLREKGDNPD
VLMMTATPIPRTLAITAFGDMDVSVIDQMPAGRKPIITRWVKHEQLNVVLNWLEKELQRGAQVYVISPLIEESEALDLKN
AIALEEELKIYFGDKAQVSLLHGKMKNDEKDAIMQGFKKGKIDILVSTTVIEVGVNVPNATVMLIMDADRFGLSQLHQLR
GRVGRGDKQSYAVLVANPKTESGKKRMKIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIVEDYPILEEARK
VASQIVSIPDWRTHADWHIVALYLDKQGYLD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=186458 A6J72_RS07715 WP_082312147.1 1541552..1543567(+) (recG/mmsA) [Streptococcus intermedius strain FDAARGOS_233]
ATGAATTTACACCAACCTTTAACGGTTCTGCCAGGTGTAGGACCAAAATCTGCCGAAAAATTGAGTAAACTTGGTATTGA
GAACCTGCAGGATTTGCTGCTCTATTTTCCATTTCGCTATGAAGACTTTAAAAGTAAAAATGTGTTAGAATTGGAAGATG
GTGAAAAGGCAGTTGTTTCAGGAGTGGTCGTTACACCGGCTAACGTGCAGTATTATGGTTATAAGCGTAATCGCCTGCGT
TTTACTATCAAGCAAGGTGAAGTGGTCCTTGCCGTCAACTTTTTTAATCAGCCTTATCTAGCAGATAAGGTAGCACTTGG
TTCAACTATTGCTATTTTTGGCAAATGGGATAAGGCCAAGGCTGGTTTGACTGGAATGAAAATTTTAGCACAAGTAGAAG
ATGATTTGCAACCAGTCTATCGAGTGGCTCAGGGGATTAGTCAAACGAGTTTAGTAAAGACTATTAAAATAGCTTTTGAC
CAAGGCCTAGACCTTCTATTGGAAGAAAATATACCTCAAATTCTGCTAGGTCATTATCAACTATTGGGACGTAGCCAAGC
TGTGCGCGCGATGCATTTTCCAAAAGATTTGGCAGAATACAAACAAGCTTTGCGTCGAATCAAGTTTGAAGAGCTTTTTT
ACTTTGAAATGCAGTTACAAGTCCTAAAGAGCGAAAGCAAGAATGCGAGTCAAGGGTTAGCTATTCTTTGGCGAGATGAT
TTATTAGAGAAGAAGTTGTCATTGCTCCCTTTTGAGCTAACGGATGCCCAGAAACAGAGTCTCGATGACATTCTACAGGA
TATGCAAGCCCCAATCCACATGAACCGACTTTTACAGGGAGATGTTGGCAGTGGAAAGACAGTGGTTGCGTGTCTAGCTA
TGTATGCCGCTTATTCAGCTGGGGTGCAGTCTGCTCTTATGGTACCGACTGAAATTTTGGCTGAACAGCACTTTGCTAGC
CTCACTCAGCTTTTTCCTGAGTTACGGATAATTCTGTTGACAGGAGGAATGAAATTAGTAGAACGAAAGCAGGCATTAGA
TGCTATTAAAACTGGACAGGTGGATATGATTGTTGGAACCCATGCCCTGATTCAAGAAGGAGTTTCCTATCATCGTTTGG
GCCTAGTAATTATTGATGAGCAGCATCGTTTTGGAGTGGAGCAGAGACGGGTTCTGCGGGAAAAGGGGGATAATCCTGAT
GTTCTCATGATGACTGCAACACCGATTCCGAGGACACTTGCGATCACTGCCTTTGGCGATATGGATGTGTCGGTTATTGA
TCAAATGCCAGCGGGGCGTAAGCCGATTATCACTCGTTGGGTTAAGCACGAGCAGCTGAATGTGGTTCTCAATTGGTTGG
AGAAAGAGCTGCAACGAGGTGCTCAGGTATATGTCATCTCTCCTTTGATTGAGGAGTCAGAAGCGCTGGATCTAAAAAAT
GCTATTGCTTTGGAAGAGGAATTAAAGATTTATTTCGGTGACAAAGCACAAGTGTCTCTGCTACATGGTAAAATGAAGAA
CGATGAAAAAGATGCCATTATGCAGGGCTTTAAGAAAGGAAAAATAGATATTCTGGTATCTACAACAGTCATTGAAGTCG
GTGTTAATGTACCAAATGCTACGGTTATGCTAATCATGGATGCGGATCGTTTTGGGCTCAGTCAGCTCCACCAATTGCGC
GGTCGGGTAGGACGTGGAGACAAGCAATCTTATGCGGTTCTCGTGGCTAATCCCAAGACTGAATCTGGTAAGAAGCGCAT
GAAAATCATGACAGAAACGACTAACGGTTTCGTCTTAGCTGAGGAAGACCTGAAAATGCGTGGTTCTGGTGAAATCTTTG
GCACTCGGCAGTCTGGTTTACCAGAATTTCAGGTGGCGGATATTGTAGAGGATTATCCGATTTTAGAGGAAGCCAGAAAA
GTTGCTAGCCAAATTGTATCTATTCCTGATTGGCGAACGCATGCAGATTGGCATATTGTAGCACTTTATTTGGATAAGCA
GGGTTATTTGGATTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(447-566)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-649)

DEAD/DEAH box helicase (DEAD)

(254-411)

RecG wedge domain (RecG_wedge)

(12-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

77.496

100

0.775
  recG/mmsA Streptococcus pneumoniae R36A

77.496

100

0.775
  recG Bacillus subtilis subsp. subtilis str. 168

48.23

100

0.487
  recG Neisseria meningitidis strain C311

39.239

100

0.399