Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | A6B40_RS00430 | Genome accession | NZ_CP016226 |
| Coordinates | 92326..92805 (+) | Length | 159 a.a. |
| NCBI ID | WP_025217064.1 | Uniprot ID | W0QBW2 |
| Organism | Mannheimia varigena strain 177 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 87326..97805
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6B40_RS00410 (A6B40_00410) | - | 88230..88925 (+) | 696 | WP_025247567.1 | aspartate/glutamate racemase family protein | - |
| A6B40_RS00415 (A6B40_00415) | - | 88943..90253 (+) | 1311 | WP_176671232.1 | anaerobic C4-dicarboxylate transporter | - |
| A6B40_RS00420 (A6B40_00420) | - | 90480..90713 (+) | 234 | WP_025247569.1 | YgjV family protein | - |
| A6B40_RS00425 (A6B40_00425) | radA | 90767..92146 (-) | 1380 | WP_025247570.1 | DNA repair protein RadA | - |
| A6B40_RS00430 (A6B40_00430) | pilA | 92326..92805 (+) | 480 | WP_025217064.1 | prepilin peptidase-dependent pilin | Machinery gene |
| A6B40_RS00435 (A6B40_00435) | pilB | 92826..94217 (+) | 1392 | WP_176671233.1 | GspE/PulE family protein | Machinery gene |
| A6B40_RS00440 (A6B40_00440) | pilC | 94210..95406 (+) | 1197 | WP_176671234.1 | type II secretion system F family protein | Machinery gene |
| A6B40_RS00445 (A6B40_00445) | - | 95410..96066 (+) | 657 | WP_176671235.1 | prepilin peptidase | - |
| A6B40_RS00450 (A6B40_00450) | coaE | 96098..96733 (+) | 636 | WP_025247575.1 | dephospho-CoA kinase | - |
| A6B40_RS00455 (A6B40_00455) | yacG | 96715..96900 (+) | 186 | WP_176671236.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 159 a.a. Molecular weight: 17107.53 Da Isoelectric Point: 9.0783
>NTDB_id=186385 A6B40_RS00430 WP_025217064.1 92326..92805(+) (pilA) [Mannheimia varigena strain 177]
MQKIVHFRPLYIRQLNKAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLRASASYKSDVELCIYNSNRLDNCSG
GTNGIQANKTSGNETKYLNSITVTKGVITVTGKGSLDGYSYTLTPTFSNNTISWSVNCKGSDTSLFPAGFCSATATPNG
MQKIVHFRPLYIRQLNKAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLRASASYKSDVELCIYNSNRLDNCSG
GTNGIQANKTSGNETKYLNSITVTKGVITVTGKGSLDGYSYTLTPTFSNNTISWSVNCKGSDTSLFPAGFCSATATPNG
Nucleotide
Download Length: 480 bp
>NTDB_id=186385 A6B40_RS00430 WP_025217064.1 92326..92805(+) (pilA) [Mannheimia varigena strain 177]
ATGCAAAAAATTGTACATTTTCGACCGCTTTACATTCGTCAATTAAACAAGGCGTTTACATTAATTGAGTTGATGATCGT
GATTGCGATCATTGCCATTCTTGCAACTATTGCCATTCCCTCCTACAACTCTTACACGCAAAAAGCTGCGTTATCGGAGT
TGTTGCGGGCTTCGGCTTCCTATAAATCAGATGTTGAGTTGTGTATTTATAATAGTAATAGGCTGGATAATTGCTCTGGT
GGCACGAATGGTATTCAAGCCAATAAAACGAGTGGCAATGAAACTAAATATCTCAATTCGATTACCGTAACTAAAGGCGT
GATTACCGTAACAGGCAAAGGTTCGCTTGATGGCTATAGTTATACACTGACACCAACTTTTTCCAATAATACAATTAGTT
GGTCAGTAAATTGCAAAGGGAGTGATACAAGCTTATTCCCAGCGGGTTTCTGTAGTGCTACGGCTACACCAAATGGCTAA
ATGCAAAAAATTGTACATTTTCGACCGCTTTACATTCGTCAATTAAACAAGGCGTTTACATTAATTGAGTTGATGATCGT
GATTGCGATCATTGCCATTCTTGCAACTATTGCCATTCCCTCCTACAACTCTTACACGCAAAAAGCTGCGTTATCGGAGT
TGTTGCGGGCTTCGGCTTCCTATAAATCAGATGTTGAGTTGTGTATTTATAATAGTAATAGGCTGGATAATTGCTCTGGT
GGCACGAATGGTATTCAAGCCAATAAAACGAGTGGCAATGAAACTAAATATCTCAATTCGATTACCGTAACTAAAGGCGT
GATTACCGTAACAGGCAAAGGTTCGCTTGATGGCTATAGTTATACACTGACACCAACTTTTTCCAATAATACAATTAGTT
GGTCAGTAAATTGCAAAGGGAGTGATACAAGCTTATTCCCAGCGGGTTTCTGTAGTGCTACGGCTACACCAAATGGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
65.409 |
100 |
0.654 |
| pilA | Haemophilus influenzae 86-028NP |
57.746 |
89.308 |
0.516 |
| pilA | Haemophilus influenzae Rd KW20 |
55.634 |
89.308 |
0.497 |