Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   BAU10_RS13620 Genome accession   NZ_CP016224
Coordinates   2984059..2984634 (-) Length   191 a.a.
NCBI ID   WP_054577259.1    Uniprot ID   A0AAW6ZZY0
Organism   Vibrio alginolyticus strain ZJ-T     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2979059..2989634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAU10_RS13595 (BAU10_13595) aroB 2979358..2980458 (-) 1101 WP_005381318.1 3-dehydroquinate synthase -
  BAU10_RS13600 (BAU10_13600) aroK 2980491..2981009 (-) 519 WP_005381319.1 shikimate kinase AroK -
  BAU10_RS13605 (BAU10_13605) pilQ 2981197..2982942 (-) 1746 WP_005382765.1 type IV pilus secretin PilQ Machinery gene
  BAU10_RS13610 (BAU10_13610) pilP 2982968..2983483 (-) 516 WP_065274915.1 pilus assembly protein PilP Machinery gene
  BAU10_RS13615 (BAU10_13615) pilO 2983473..2984066 (-) 594 WP_042523672.1 type 4a pilus biogenesis protein PilO Machinery gene
  BAU10_RS13620 (BAU10_13620) pilN 2984059..2984634 (-) 576 WP_054577259.1 PilN domain-containing protein Machinery gene
  BAU10_RS13625 (BAU10_13625) pilM 2984618..2985634 (-) 1017 WP_017821733.1 type IV pilus biogenesis protein PilM Machinery gene
  BAU10_RS13630 (BAU10_13630) - 2985779..2988340 (+) 2562 WP_065274916.1 penicillin-binding protein 1A -
  BAU10_RS13635 (BAU10_13635) oxyR 2988395..2989306 (-) 912 WP_005381326.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22362.86 Da        Isoelectric Point: 7.4657

>NTDB_id=186371 BAU10_RS13620 WP_054577259.1 2984059..2984634(-) (pilN) [Vibrio alginolyticus strain ZJ-T]
MLYRINLLPWRENQREEHRRRFISLVALGMLVAVGIQWGIGKFFEYQQDQQQDRLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVTEKKLEAQRG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=186371 BAU10_RS13620 WP_054577259.1 2984059..2984634(-) (pilN) [Vibrio alginolyticus strain ZJ-T]
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAATCAAAGAGAAGAGCACCGACGTCGTTTCATCAGTTTGGTCGC
ATTAGGCATGTTGGTCGCTGTTGGCATCCAGTGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAACAACAGGATC
GGCTCGATTACCTCACTCACTACATTGCCGAACTCGACCAGCGTATTGAAGCAATGAAAATTGCAGAGCAAGAGCACAGC
AAAATCCTCGAACGCCTAAAGGTTGTTGAAGGTTTACAAAACGGACGAAACAAAACGACCGAGTTCATGAACTTAATGCC
TGCCGTTATCCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCTGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGCTCGGCCAAGTTGAACGACGTAGAAATGCATTCCATCGTT
CACGGCAAAGCCCGTTTTGGGAAAGAGTTTCAAACATTCAAAGTGTCTTTCATGTTCAAAGTAACGGAGAAGAAATTGGA
GGCTCAACGTGGTTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

82.723

100

0.827
  pilN Vibrio cholerae strain A1552

62.712

92.67

0.581

Multiple sequence alignment