Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BAU10_RS12160 | Genome accession | NZ_CP016224 |
| Coordinates | 2699996..2700469 (+) | Length | 157 a.a. |
| NCBI ID | WP_065274839.1 | Uniprot ID | A0A7Y4EZC0 |
| Organism | Vibrio alginolyticus strain ZJ-T | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2694996..2705469
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAU10_RS12145 (BAU10_12145) | pdhR | 2697029..2697796 (-) | 768 | WP_005379989.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| BAU10_RS12150 (BAU10_12150) | ampD | 2698202..2698753 (-) | 552 | WP_005379985.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| BAU10_RS12155 (BAU10_12155) | nadC | 2698846..2699733 (+) | 888 | WP_005379983.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BAU10_RS12160 (BAU10_12160) | pilA | 2699996..2700469 (+) | 474 | WP_065274839.1 | pilin | Machinery gene |
| BAU10_RS12165 (BAU10_12165) | pilB | 2700475..2702160 (+) | 1686 | WP_065274840.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BAU10_RS12170 (BAU10_12170) | pilC | 2702184..2703407 (+) | 1224 | WP_017635918.1 | type II secretion system F family protein | Machinery gene |
| BAU10_RS12175 (BAU10_12175) | pilD | 2703472..2704341 (+) | 870 | WP_064354291.1 | prepilin peptidase | Machinery gene |
| BAU10_RS12180 (BAU10_12180) | coaE | 2704342..2704956 (+) | 615 | WP_065274841.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16576.11 Da Isoelectric Point: 7.6275
>NTDB_id=186355 BAU10_RS12160 WP_065274839.1 2699996..2700469(+) (pilA) [Vibrio alginolyticus strain ZJ-T]
MKNSKQKKQQGFTLIELMIVVAIIGILSAFAVPAYQNYTKKATLSEFPKAAAAAKLAVELCAHENASNETTFISECVKEE
NGIPAKFVLNNIEISVVKATDASVSGAIAVIAAADEVKGPIAKGEQYIMAASYKTQGLEWGASCKAGGKAQTDYCPN
MKNSKQKKQQGFTLIELMIVVAIIGILSAFAVPAYQNYTKKATLSEFPKAAAAAKLAVELCAHENASNETTFISECVKEE
NGIPAKFVLNNIEISVVKATDASVSGAIAVIAAADEVKGPIAKGEQYIMAASYKTQGLEWGASCKAGGKAQTDYCPN
Nucleotide
Download Length: 474 bp
>NTDB_id=186355 BAU10_RS12160 WP_065274839.1 2699996..2700469(+) (pilA) [Vibrio alginolyticus strain ZJ-T]
ATGAAAAACAGTAAACAGAAAAAACAACAGGGTTTTACTCTGATTGAGTTAATGATTGTGGTGGCGATTATTGGCATCTT
ATCTGCTTTCGCAGTTCCTGCTTACCAAAATTATACTAAGAAAGCGACATTGTCAGAATTTCCAAAAGCAGCTGCGGCAG
CCAAATTAGCAGTAGAATTATGTGCCCATGAGAATGCCTCAAATGAAACAACATTTATTAGTGAATGTGTAAAGGAAGAA
AATGGAATTCCCGCTAAATTCGTTTTGAATAATATTGAAATTAGCGTTGTTAAAGCCACAGATGCTAGCGTTTCTGGTGC
GATAGCAGTTATTGCAGCAGCTGATGAAGTTAAGGGACCTATTGCTAAAGGCGAGCAATATATCATGGCTGCATCATATA
AAACTCAAGGCTTAGAGTGGGGGGCTTCATGTAAAGCTGGCGGTAAAGCACAAACAGACTACTGCCCAAACTAA
ATGAAAAACAGTAAACAGAAAAAACAACAGGGTTTTACTCTGATTGAGTTAATGATTGTGGTGGCGATTATTGGCATCTT
ATCTGCTTTCGCAGTTCCTGCTTACCAAAATTATACTAAGAAAGCGACATTGTCAGAATTTCCAAAAGCAGCTGCGGCAG
CCAAATTAGCAGTAGAATTATGTGCCCATGAGAATGCCTCAAATGAAACAACATTTATTAGTGAATGTGTAAAGGAAGAA
AATGGAATTCCCGCTAAATTCGTTTTGAATAATATTGAAATTAGCGTTGTTAAAGCCACAGATGCTAGCGTTTCTGGTGC
GATAGCAGTTATTGCAGCAGCTGATGAAGTTAAGGGACCTATTGCTAAAGGCGAGCAATATATCATGGCTGCATCATATA
AAACTCAAGGCTTAGAGTGGGGGGCTTCATGTAAAGCTGGCGGTAAAGCACAAACAGACTACTGCCCAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio campbellii strain DS40M4 |
56.051 |
100 |
0.561 |
| pilA | Haemophilus influenzae Rd KW20 |
42.361 |
91.72 |
0.389 |
| pilA | Haemophilus influenzae 86-028NP |
39.86 |
91.083 |
0.363 |