Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   A6J51_RS12330 Genome accession   NZ_CP020423
Coordinates   2084847..2085344 (-) Length   165 a.a.
NCBI ID   WP_192941139.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_212     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2079847..2090344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J51_RS12290 (A6J51_11940) dut 2080419..2080871 (-) 453 WP_057288628.1 dUTP diphosphatase -
  A6J51_RS12295 (A6J51_11945) - 2081019..2081447 (+) 429 Protein_2007 AzlC family ABC transporter permease -
  A6J51_RS12330 (A6J51_11980) pilL 2084847..2085344 (-) 498 WP_192941139.1 PilX family type IV pilin Machinery gene
  A6J51_RS12335 (A6J51_11985) pilK 2085349..2085942 (-) 594 WP_080611326.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A6J51_RS12340 (A6J51_11990) pilJ 2085921..2086862 (-) 942 WP_080611327.1 PilW family protein Machinery gene
  A6J51_RS12345 (A6J51_11995) pilV 2086859..2087470 (-) 612 WP_181778298.1 type IV pilus modification protein PilV Regulator
  A6J51_RS12350 (A6J51_12000) pilH 2087494..2088171 (-) 678 WP_002213841.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  A6J51_RS12355 (A6J51_12005) dnaB 2088480..2089886 (-) 1407 WP_021438004.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18195.03 Da        Isoelectric Point: 9.7322

>NTDB_id=186273 A6J51_RS12330 WP_192941139.1 2084847..2085344(-) (pilL) [Neisseria meningitidis strain FDAARGOS_212]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNTVKQIILKNPQDSNDILNIKLTMFVSGYKM
NPKIAEKYSVSGEFVDAPKSRANRALKSRAYRLVGVPKAGTGYTLSVWVNSVGDGYKCRDAVSARAYSETLSADAGCEAF
SNRKK

Nucleotide


Download         Length: 498 bp        

>NTDB_id=186273 A6J51_RS12330 WP_192941139.1 2084847..2085344(-) (pilL) [Neisseria meningitidis strain FDAARGOS_212]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATACTGTCAAAC
AGATTATTTTGAAAAATCCACAGGATAGTAATGATATCCTCAATATAAAACTGACAATGTTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAGTGTTTCGGGGGAATTTGTCGATGCGCCAAAATCAAGGGCAAACAGGGCGTTAAA
ATCAAGGGCATACAGGTTGGTCGGCGTTCCGAAGGCAGGGACGGGTTATACTTTGTCGGTATGGGTAAACAGCGTGGGCG
ACGGATACAAATGCCGTGATGCCGTTTCTGCCCGAGCCTATTCGGAGACTTTGTCCGCGGATGCCGGCTGTGAAGCTTTC
TCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

82.424

100

0.824
  pilX Neisseria meningitidis 8013

78.788

100

0.788