Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   A6J51_RS12350 Genome accession   NZ_CP020423
Coordinates   2087494..2088171 (-) Length   225 a.a.
NCBI ID   WP_002213841.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_212     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2082494..2093171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J51_RS12330 (A6J51_11980) pilL 2084847..2085344 (-) 498 WP_192941139.1 PilX family type IV pilin Machinery gene
  A6J51_RS12335 (A6J51_11985) pilK 2085349..2085942 (-) 594 WP_080611326.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A6J51_RS12340 (A6J51_11990) pilJ 2085921..2086862 (-) 942 WP_080611327.1 PilW family protein Machinery gene
  A6J51_RS12345 (A6J51_11995) pilV 2086859..2087470 (-) 612 WP_181778298.1 type IV pilus modification protein PilV Regulator
  A6J51_RS12350 (A6J51_12000) pilH 2087494..2088171 (-) 678 WP_002213841.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  A6J51_RS12355 (A6J51_12005) dnaB 2088480..2089886 (-) 1407 WP_021438004.1 replicative DNA helicase -
  A6J51_RS12365 (A6J51_12015) - 2090050..2090637 (+) 588 WP_002213845.1 superoxide dismutase -
  A6J51_RS12380 (A6J51_12025) - 2091899..2092408 (-) 510 WP_002227434.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A6J51_RS12385 (A6J51_12030) - 2092740..2093072 (-) 333 WP_002235681.1 hypothetical protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25183.79 Da        Isoelectric Point: 9.8985

>NTDB_id=186277 A6J51_RS12350 WP_002213841.1 2087494..2088171(-) (pilH) [Neisseria meningitidis strain FDAARGOS_212]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTPN
NKCDSGKKGQGMLAFGDKNGNKGYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
NQDLTNTSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=186277 A6J51_RS12350 WP_002213841.1 2087494..2088171(-) (pilH) [Neisseria meningitidis strain FDAARGOS_212]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATTCTACC
AATCAGGATCTCACGAATACTTCCAAATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCGGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

83.036

99.556

0.827

Multiple sequence alignment