Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   A6J51_RS04955 Genome accession   NZ_CP020423
Coordinates   823819..824268 (+) Length   149 a.a.
NCBI ID   WP_002218144.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_212     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 818819..829268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J51_RS04950 (A6J51_04755) comE 823432..823731 (+) 300 WP_105165228.1 helix-hairpin-helix domain-containing protein Machinery gene
  A6J51_RS04955 (A6J51_04760) comP 823819..824268 (+) 450 WP_002218144.1 type IV pilin protein Machinery gene
  A6J51_RS04960 (A6J51_04765) - 824358..824752 (-) 395 Protein_811 5'-nucleotidase -
  A6J51_RS04965 (A6J51_04770) - 824965..825315 (+) 351 Protein_812 IS5/IS1182 family transposase -
  A6J51_RS04970 (A6J51_04775) - 825341..826306 (-) 966 WP_002221064.1 IS30-like element IS1655 family transposase -
  A6J51_RS04975 (A6J51_13420) - 826396..826521 (+) 126 Protein_814 IS5/IS1182 family transposase -
  A6J51_RS04985 (A6J51_04785) - 826927..827982 (+) 1056 WP_002221681.1 DNA cytosine methyltransferase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16868.82 Da        Isoelectric Point: 9.7951

>NTDB_id=186238 A6J51_RS04955 WP_002218144.1 823819..824268(+) (comP) [Neisseria meningitidis strain FDAARGOS_212]
MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINAVRAALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEG
FCIRLNGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLFK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=186238 A6J51_RS04955 WP_002218144.1 823819..824268(+) (comP) [Neisseria meningitidis strain FDAARGOS_212]
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGTGGTCTTGATATTGTCTGTACTTGCTTTAATTGTTTA
TCCGAGCTATCGCAATTATGTTGAGAAAGCAAAGATAAATGCAGTGCGGGCAGCCTTGTTAGAAAATGCACATTTTATGG
AAAAGTTTTATCTGCAGAATGGGAGGTTTAAACAAACATCTACCAAATGGCCAAGTTTGCCGATTAAAGAGGCAGAAGGC
TTTTGTATCCGTTTGAATGGAATCGCGCGCGGGGCTTTAGACAGTAAATTCATGTTGAAGGCGGTAGCCATAGATAAAGA
TAAAAATCCTTTTATTATTAAGATGAATGAAAATCTAGTAACCTTTATTTGCAAGAAGTCCGCCAGTTCGTGTAGTGACG
GGCTGGATTATTTTAAAGGAAATGATAAGGACTGCAAGTTATTTAAGTAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria meningitidis 8013

100

100

1
  comP Neisseria gonorrhoeae MS11

99.329

100

0.993
  comP Neisseria subflava NJ9703

49.664

100

0.497