Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   Q5O_RS19100 Genome accession   NZ_CP016212
Coordinates   4185220..4187436 (-) Length   738 a.a.
NCBI ID   WP_041167186.1    Uniprot ID   -
Organism   Pseudomonas putida JB     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4180220..4192436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5O_RS19065 (Q5O_19065) murB 4180527..4181546 (-) 1020 WP_014591933.1 UDP-N-acetylmuramate dehydrogenase -
  Q5O_RS19070 (Q5O_19070) - 4181543..4182007 (-) 465 WP_014591934.1 low molecular weight protein-tyrosine-phosphatase -
  Q5O_RS19075 (Q5O_19075) kdsB 4182007..4182771 (-) 765 WP_014591935.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Q5O_RS19080 (Q5O_19080) - 4182768..4182953 (-) 186 WP_003247142.1 Trm112 family protein -
  Q5O_RS19085 (Q5O_19085) lpxK 4182998..4183999 (-) 1002 WP_070384184.1 tetraacyldisaccharide 4'-kinase -
  Q5O_RS19090 (Q5O_19090) - 4183999..4184433 (-) 435 WP_014591937.1 ExbD/TolR family protein -
  Q5O_RS19095 (Q5O_19095) exbB 4184430..4185065 (-) 636 WP_026031862.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  Q5O_RS19100 (Q5O_19100) comA 4185220..4187436 (-) 2217 WP_041167186.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q5O_RS27295 - 4187579..4188085 (+) 507 Protein_3830 DUF2062 domain-containing protein -
  Q5O_RS19105 (Q5O_19105) - 4188095..4188874 (-) 780 WP_003247128.1 ABC transporter permease -
  Q5O_RS19110 (Q5O_19110) - 4188871..4189803 (-) 933 WP_010952922.1 ABC transporter ATP-binding protein -
  Q5O_RS19115 (Q5O_19115) - 4189937..4190560 (-) 624 WP_014591940.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79580.41 Da        Isoelectric Point: 10.1006

>NTDB_id=186216 Q5O_RS19100 WP_041167186.1 4185220..4187436(-) (comA) [Pseudomonas putida JB]
MRTGMFALALGLLCLGFLPALPSVGWLITLAACAVGSLFTRVWPLGWFLLGLCWACGSAQQALDDRLAAGLEGRTLWLEG
RVAGLPARTAQGVRFELEAPRSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPDGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDALRQRLLMVEANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGVFFPLLVALVAVLVFEPL
AALLPGFWLSFAAVATLIYCFSARLGGWRPWQAWTRAQWVIAVGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLMLPLAGVGEALLWLAGGLLDVLFRGLALVAQQRPAWVPPALPLWAWLLVCLGALLILLPRGVPLRGLGGVMLLALW
VPREPVPFGQVEVWQLDVGQGLAVFLRTRHHSLLYDAGPARGESDLGERVVLPTLRKLGVGGLDVMVISHAHADHSGGAG
AIQRGLPIKRIIGGEALVDVPLQPCVSGEQWDWDGVRFSLWRWVDGESSNDRSCVLLVEAQGERLLLAGDIEAAAERAWL
ADTEVPRIDWLQAPHHGSRSSSTEAFVRATAPRGVLISRGRNNSFGHPHVQVVERYGRHGVVMHDTAVEGALRLVLGRHG
EVEGVRRQRRFWRDVGGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=186216 Q5O_RS19100 WP_041167186.1 4185220..4187436(-) (comA) [Pseudomonas putida JB]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTTCCTGCATTGCCATCGGTCGGATGGTT
GATAACCCTGGCAGCCTGCGCTGTCGGCAGCCTGTTTACCCGCGTCTGGCCACTGGGTTGGTTTCTGCTGGGCTTGTGTT
GGGCGTGCGGGTCTGCTCAGCAGGCCCTTGATGATCGTCTGGCTGCCGGCCTGGAGGGGCGCACCTTGTGGCTGGAAGGG
CGGGTGGCGGGTTTGCCGGCCCGCACAGCACAAGGCGTGCGTTTCGAACTGGAAGCGCCACGCTCGCGGCGGGCCGAACT
GCCTCAGCGCTTGCAACTGAGCTGGTTCGACGGGCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGACGGGCTGCTGAACCCGCATGGGCCCGACCGTGAAGCGCAGTTGCTGGCGCGACGGGTGGGCGCTACGGGT
ACGGTCAAGGCGGGGCAGTTGCTGGCGCCAGTCGCCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTGATGGTCGA
AGCCAATGGCCGACAGGCAGCGCTGGTGGCCCTGGTGCTTGGCGATGGTGCGGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATCGGCCTGGTCGCCGGTTTGCTCTATGGCCTG
GTTGCCGGGCTGGCGCGTTGGGGGCTATGGCCGGCAAGGCTACCGTGGTTACCCTGGGCCTGCGGCCTGGCCATGGCCGC
AGCGCTGGCCTACGGGTGGCTGGCTGGCGGTGGGGTGCCAGTGCAGCGGGCCTGCCTGATGCTAGCCGTGGTGCTGCTCT
GGCGTCTGCGCTTTCGCCACCTTGGCGTTTTTTTTCCGTTGCTGGTTGCACTGGTCGCTGTGCTTGTCTTCGAGCCACTG
GCGGCGTTGCTGCCTGGGTTCTGGCTGTCGTTCGCCGCCGTGGCCACGCTCATCTACTGCTTCAGTGCCCGGTTGGGTGG
TTGGCGGCCCTGGCAGGCCTGGACGCGTGCGCAATGGGTGATCGCCGTCGGCTTGCTGCCGGTGTTGCTGGCCACCGGCT
TGCCGGTGAGCCTCAGTGCGCCGCTGGCCAACCTTGTGGCGGTGCCGTGGGTCAGCCTGGCGGTCTTGCCGTTGGCGTTG
CTGGGCACGCTGATGTTGCCGCTGGCGGGCGTTGGCGAGGCGTTGCTCTGGCTGGCAGGTGGCCTGCTGGATGTGCTGTT
CCGCGGGCTGGCGCTGGTGGCGCAGCAGCGCCCGGCATGGGTGCCGCCGGCCCTGCCGTTGTGGGCCTGGCTGCTGGTAT
GTCTGGGTGCGCTGTTGATTTTGCTGCCCCGTGGTGTGCCGCTGCGCGGGTTGGGAGGGGTGATGCTGCTGGCGCTGTGG
GTGCCCAGGGAGCCGGTGCCGTTTGGCCAGGTCGAGGTCTGGCAGCTGGATGTTGGCCAGGGGCTGGCGGTGTTTTTGCG
TACGCGGCATCACAGCCTCCTCTACGATGCCGGGCCGGCCAGGGGGGAAAGCGACTTGGGGGAACGCGTGGTGCTGCCAA
CCTTGCGCAAGCTGGGGGTGGGCGGCCTTGACGTGATGGTGATCAGCCATGCGCATGCCGATCATTCGGGCGGGGCCGGA
GCCATCCAGCGTGGTTTGCCGATCAAGCGGATAATCGGTGGGGAAGCGCTGGTTGATGTTCCGTTGCAGCCTTGTGTCAG
TGGCGAGCAATGGGATTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGTGGACGGGGAGAGCAGTAATGACCGTTCCT
GTGTCTTGTTGGTCGAAGCGCAGGGTGAGCGCTTGCTGCTGGCAGGGGATATCGAGGCTGCTGCCGAAAGGGCCTGGCTG
GCGGACACTGAAGTGCCGCGTATCGACTGGCTGCAGGCGCCGCATCATGGCAGCCGCAGTTCGTCCACCGAGGCGTTCGT
CCGGGCTACCGCACCGCGCGGGGTATTGATTTCGCGGGGGCGCAACAACAGCTTCGGGCATCCGCACGTGCAGGTGGTCG
AGCGGTATGGGCGGCATGGAGTGGTGATGCATGATACGGCAGTGGAGGGGGCATTGCGGTTGGTGCTGGGGCGGCATGGG
GAGGTTGAGGGTGTGCGCCGACAGCGGCGATTCTGGCGTGATGTGGGTGGTGGCTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(12-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.807

97.696

0.575
  comA Ralstonia pseudosolanacearum GMI1000

34.694

100

0.369

Multiple sequence alignment