Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   Q5O_RS19095 Genome accession   NZ_CP016212
Coordinates   4184430..4185065 (-) Length   211 a.a.
NCBI ID   WP_026031862.1    Uniprot ID   A0AA34WU07
Organism   Pseudomonas putida JB     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4179430..4190065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5O_RS19065 (Q5O_19065) murB 4180527..4181546 (-) 1020 WP_014591933.1 UDP-N-acetylmuramate dehydrogenase -
  Q5O_RS19070 (Q5O_19070) - 4181543..4182007 (-) 465 WP_014591934.1 low molecular weight protein-tyrosine-phosphatase -
  Q5O_RS19075 (Q5O_19075) kdsB 4182007..4182771 (-) 765 WP_014591935.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Q5O_RS19080 (Q5O_19080) - 4182768..4182953 (-) 186 WP_003247142.1 Trm112 family protein -
  Q5O_RS19085 (Q5O_19085) lpxK 4182998..4183999 (-) 1002 WP_070384184.1 tetraacyldisaccharide 4'-kinase -
  Q5O_RS19090 (Q5O_19090) - 4183999..4184433 (-) 435 WP_014591937.1 ExbD/TolR family protein -
  Q5O_RS19095 (Q5O_19095) exbB 4184430..4185065 (-) 636 WP_026031862.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  Q5O_RS19100 (Q5O_19100) comA 4185220..4187436 (-) 2217 WP_041167186.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q5O_RS27295 - 4187579..4188085 (+) 507 Protein_3830 DUF2062 domain-containing protein -
  Q5O_RS19105 (Q5O_19105) - 4188095..4188874 (-) 780 WP_003247128.1 ABC transporter permease -
  Q5O_RS19110 (Q5O_19110) - 4188871..4189803 (-) 933 WP_010952922.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22889.20 Da        Isoelectric Point: 7.3616

>NTDB_id=186215 Q5O_RS19095 WP_026031862.1 4184430..4185065(-) (exbB) [Pseudomonas putida JB]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLASGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVIGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=186215 Q5O_RS19095 WP_026031862.1 4184430..4185065(-) (exbB) [Pseudomonas putida JB]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAACGCCTGTGGACCTTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGATTCGCCACTGGGTGAAATCCTCGCGGCGGGCCTGGCCAAT
TCGCGTCACGGTCGGGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCATGAACTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTCGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCAGTGGCATCTCCAAGGCCCTGGTCACCACTGCG
GCTGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAACTGGTGATCGGCAT
GGAGCAGGAGGCGATCAAGTTGGTGGAAGTGATCCAGGGTGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82

Multiple sequence alignment