Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   CDIF29627_RS04070 Genome accession   NZ_CP016102
Coordinates   804638..805345 (+) Length   235 a.a.
NCBI ID   WP_021387635.1    Uniprot ID   A0A9P4DAE0
Organism   Clostridioides difficile strain DSM 29627     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 799638..810345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDIF29627_RS04040 (CDIF29627_00793) cdd1 800398..800643 (+) 246 WP_009888450.1 protein Cdd1 -
  CDIF29627_RS04045 (CDIF29627_00794) - 800861..801130 (-) 270 WP_003426848.1 DUF3795 domain-containing protein -
  CDIF29627_RS04050 (CDIF29627_00795) - 801262..801564 (-) 303 WP_003426849.1 hypothetical protein -
  CDIF29627_RS04055 (CDIF29627_00796) - 802043..802780 (-) 738 WP_003426850.1 ABC transporter permease -
  CDIF29627_RS04060 (CDIF29627_00797) - 802792..803553 (-) 762 WP_003426852.1 ABC transporter permease -
  CDIF29627_RS04065 (CDIF29627_00798) - 803553..804476 (-) 924 WP_003426859.1 ABC transporter ATP-binding protein -
  CDIF29627_RS04070 (CDIF29627_00799) scnR 804638..805345 (+) 708 WP_021387635.1 response regulator transcription factor Regulator
  CDIF29627_RS04075 (CDIF29627_00800) - 805390..806796 (+) 1407 WP_021387636.1 sensor histidine kinase -
  CDIF29627_RS04080 (CDIF29627_00801) - 808195..808584 (+) 390 WP_003426867.1 BlaI/MecI/CopY family transcriptional regulator -
  CDIF29627_RS04085 (CDIF29627_00802) - 809346..809870 (+) 525 WP_003426869.1 VOC family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26689.14 Da        Isoelectric Point: 6.1467

>NTDB_id=185804 CDIF29627_RS04070 WP_021387635.1 804638..805345(+) (scnR) [Clostridioides difficile strain DSM 29627]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFKNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKDGQEIS
LTAKEHSLLLKLYENKGRIVTSDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPRHLLTVRGLGYKLMIN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=185804 CDIF29627_RS04070 WP_021387635.1 804638..805345(+) (scnR) [Clostridioides difficile strain DSM 29627]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTAAG
AAAAGAGGGATTTAGTAGAGTATTTTTAGCATCAAGTTATGAGGAAGCTGTTAGGGTATTTAAAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTCTCTATTATGAGAAAAATTAGAGAGACATCTAAGATACCA
GTTATTTTTCTCTCTGCAAGAGGAGAAGATGAAGATAGATTGATTGGTTTGGGCTTAGGGGCTGATGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGACTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGATGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCATTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAGTGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGGGTTAGAGAGAAGATAGAAA
AAACTCCATCTACACCTAGACATCTTCTTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

49.351

98.298

0.485
  micA Streptococcus pneumoniae Cp1015

40.426

100

0.404
  vicR Streptococcus mutans UA159

38.793

98.723

0.383

Multiple sequence alignment